Skip to content

GitLab

Commit 18e12d61 authored by Hamish Tomlinson's avatar Hamish Tomlinson Committed by Copybara-Service
Browse files

Update readme for relaxation flag. 

PiperOrigin-RevId: 505130241
Change-Id: I09f20581b13b23590e1202de014d96fe9c9063ac
parent 41871c09
Hide whitespace changes
Inline Side-by-side
Showing with 5 additions and 3 deletions
README.md
View file @ 18e12d61
...@@ -363,9 +363,11 @@ section. ...@@ -363,9 +363,11 @@ section.
--output_dir=/home/user/absolute_path_to_the_output_dir --output_dir=/home/user/absolute_path_to_the_output_dir
``` ```
1. After generating the predicted model, by default AlphaFold runs a relaxation 1. After generating the predicted model, AlphaFold runs a relaxation
step to improve geometrical quality. You can control this via `--run_relax=true` step to improve local geometry. By default, only the best model (by
(default) or `--run_relax=false`. pLDDT) is relaxed (`--models_to_relax=best`), but also all of the models
(`--models_to_relax=all`) or none of the models (`--models_to_relax=none`)
can be relaxed.
1. The relaxation step can be run on GPU (faster, but could be less stable) or 1. The relaxation step can be run on GPU (faster, but could be less stable) or
CPU (slow, but stable). This can be controlled with `--enable_gpu_relax=true` CPU (slow, but stable). This can be controlled with `--enable_gpu_relax=true`
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment