GitLab

* Rename index.mdx to index.md

* With saved modifs

* Address review comment

* Treat all files

* .mdx -> .md

* Remove special char

* Update utils/tests_fetcher.py
Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr>

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Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr>

* added BioGptForSequenceClassification

* added source of copied code

* typo

* Format code with black

* Update comments for copied code

* Remove code copy comment

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Fix failing tests

* Update code copied from comments

* Fix code quality

* Update src/transformers/models/biogpt/modeling_biogpt.py
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Apply suggestions from code review
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Fix lint error

* Update src/transformers/models/biogpt/modeling_biogpt.py
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Rename model to biogpt for consistency

* Add PipelineTesterMixin to test_modeling_biogpt.py

* Apply suggestions from code review
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>

* Resolve merge confict

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Co-authored-by: Guillem García Subies <37592763+GuillemGSubies@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>

* added biogpt token classifier

* fix reviews

* Updated modeling_biogpt.py
Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>

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Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>

fix(docs): task guide links in model docs

* added resources: links to task guides that support these models

* minor polishing

* conflict resolved

* link fix

* Update docs/source/en/model_doc/vision-encoder-decoder.mdx
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

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Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* biogpt initial commit

* updated init

* fix faster decoding with use_cache

* 1. fix input_ids and input_embeds with correct device
2. added _keys_to_ignore_on_load_missing
3. updated prepare_inputs_for_generation

* add activation_dropout and scale_embedding

* replace fsmt attention with bart attention

* added test

* run make fix-copies

* doc init and fix build

* updated README with proper information

* 1. added tips to docs
2. updated BioGptTokenizer func

* 1. added tokenizer test
2. refactor tokenizer

* make fixup

* add biogpt fairseq to hf converter

* updated layer names more
similar to original checkpoints

* config update doc string and set defaults

* added "#copied" from bart model and
updated doc strings

* enable model_input_names in tokenizer

* 1.  positionalembedding depending on attention_mask
2. added attention mask to prepare for generation

* added test to verify past and generation

* BioGptLMHeadModel -> BioGptForCausalLM

* fix typo

* tokenization and test
Copyright and updated assertion

* updated Copyright and
one func at time in line

* Copyright updates and
minor doc fix

* replace assertion with ValueError

* rm extra space

* added code syntax

* revert cmnt position change

* add tokenizer to auto

* updated doc string

* tokenizer doc string update

* biogpt hub model update to microsoft/biogpt

* make fixup

* rm cmnt to fix flake8 5.0.4 vs 6 error