GitLab

* [FT] First commit for graphormer architecture.

The model has no tokenizer, as it uses a collator and preprocessing function for its input management.
Architecture to be tested against original one.
The arch might need to be changed to fit the checkpoint, but a revert to the original arch will make the code less nice to read.
TODO: doc

* [FIX] removed test model

* [FIX] import error

* [FIX] black and flake

* [DOC] added paper refs

* [FIX] [DOC]

* [FIX] black

* [DOC] Updated READMEs

* [FIX] Order of imports + rm Tokenizer calls

* [FIX] Moved assert in class to prevent doc build failure

* [FIX] make fix-copies

* [Doc] update from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [FIX] Removed Graphormer from Sequence classification model list

* [DOC] Added HF copyright to Cython file

* [DOC] Fixed comments

* [FIX] typos in class doc + removed config classes.

Todo: update doc from paper definitions

* [FIX] Removed dependency to fairseq, and replaced all asserts with Exception management

* [FIX] Homogeneized initialization of weights to pretrained constructor

* [FIX] [CP] Updated multi_hop parameter to get same results as in original implementation

* [DOC] Relevant parameter description in the configuration file

* [DOC] Updated doc and comments in main graphormer file

* [FIX] make style and quality checks

* [DOC] Fix doc format

* [FIX] [WIP] Updated part of the tests, though still a wip

* [FIX] [WIP]

* [FIX] repo consistency

* [FIX] Changed input names for more understandability

* [FIX] [BUG] updated num_classes params for propagation in the model

* simplified collator

* [FIX] Updated tests to follow new naming pattern

* [TESTS] Updated test suite along with model

* |FIX] rm tokenizer import

* [DOC] add link to graphormerdoc

* Changed section in doc from text model to graph model

* Apply suggestions from code review

Spacing, inits
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [DOC] Explain algos_graphormer functions

* Cython soft import protection

* Rm call to Callable in configuration graphormer

* [FIX] replaced asserts with Exceptions

* Add org to graphormer checkpoints

* Prefixed classes with Graphormer

* Management of init functions

* format

* fixes

* fix length file

* update indent

* relaunching ci

* Errors for missing cython imports

* fix style

* fix style doc
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Reorganize example folder

* Continue reorganization

* Change requirements for tests

* Final cleanup

* Finish regroup with tests all passing

* Copyright

* Requirements and readme

* Make a full link for the documentation

* Address review comments

* Apply suggestions from code review
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* Add symlink

* Reorg again

* Apply suggestions from code review
Co-authored-by: Thomas Wolf <thomwolf@users.noreply.github.com>

* Adapt title

* Update to new strucutre

* Remove test

* Update READMEs
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Thomas Wolf <thomwolf@users.noreply.github.com>

* Add BERT Loses Patience (Patience-based Early Exit)

* update model archive

* update format

* sort import

* flake8

* Add results

* full results

* align the table

* refactor to inherit

* default per gpu eval = 1

* Formatting

* Formatting

* isort

* modify readme

* Add check

* Fix format

* Fix format

* Doc strings

* ALBERT & BERT for sequence classification don't inherit from the original anymore

* Remove incorrect comments

* Remove incorrect comments

* Remove incorrect comments

* Sync up with new code

* Sync up with new code

* Add a test

* Add a test

* Add a test

* Add a test

* Add a test

* Add a test

* Finishing up!

* Rename and improve example

* Add test

* slightly faster test

* style

* This breaks remy prolly

* shorter test string

* no slow

* newdir structure

* New tree

* Style

* shorter

* docs

* clean

* Attempt future import

* more import hax