GitLab

* initial commit

* First draft that gets outputs without crashing!

* Add all the ported openfold dependencies

* testing

* Restructure config files for ESMFold

* Debugging to find output discrepancies

* Mainly style

* Make model runnable without extra deps

* Remove utils and merge them to the modeling file

* Use correct gelu and remove some debug prints

* More cleanup

* Update esm docs

* Update conversion script to support ESMFold properly

* Port some top-level changes from ESMFold repo

* Expand EsmFold docstrings

* Make attention_mask optional (default to all 1s)

* Add inference test for ESMFold

* Use config and not n kwargs

* Add modeling output class

* Remove einops

* Remove chunking in ESM FFN

* Update tests for ESMFold

* Quality

* REpo consistency

* Remove tree dependency from ESMFold

* make fixup

* Add an error in case my structure map function breaks later

* Remove needless code

* Stop auto-casting the LM to float16 so CPU tests pass

* Stop auto-casting the LM to float16 so CPU tests pass

* Final test updates

* Split test file

* Copyright and quality

* Unpin PyTorch to see built doc

* Fix config file to_dict() method

* Add some docstrings to the output

* Skip TF checkpoint tests for ESM until we reupload those

* make fixup

* More docstrings

* Unpin to get even with main

* Flag example to write
Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>

Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>

* Add postprocessing methods

* Update docs

* Add fix

* Add test

* Add test for deformable detr postprocessing

* Add post processing methods for segmentation

* Update code examples

* Add post_process to make the pipeline work

* Apply updates
Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>

* add Onnx Config for ImageGPT

* add generate_dummy_inputs for onnx config

* add TYPE_CHECKING clause

* Update doc for generate_dummy_inputs
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Support segformer fx

* Add fx_compatible attribute to test_modeling_segformer.py

* Update glpn model (fx support)

glpn model was copied from segformer.

* Update utils/fx.py | add semantic-segmentation

for SegformerForSemanticSegmentation model

* Fix minor import order(isort)

* Add random input generation for segformer fx
Co-authored-by: noelbird <lduldu00228@gmail.com>

* Wip

* Add safetensors support for TensorFlow

* First tests

* Add final test for now

* Retrigger CI like this

* Update src/transformers/modeling_tf_utils.py
Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr>
Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr>

* Fix tests when running on GPU

* Fix tests that require mp.set_start_method

* Add pegasus_x

* ViTMSN

* ESM
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* add first generation tutorial

* [Flax] Add subfolder functionality

* [Flax] Add subfolder functionality

* up

* finish

* delete file and re-add test

* Fix test_save_load_fast_init_to_base

* Fix test_save_load_fast_init_to_base

* update
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Factored out some code in the image-segmentation pipeline

Re-enable `small_model_pt`.

Re-enable `small_model_pt`.

Enabling the current test with the current values.

Debugging the values on the CI.

More logs ? Printing doesn't work ?

Using the CI values instead. Seems to be a Pillow sensitivity.

Added a test showcasing that models not supporting some tasks get a
clear error.

Factored out code.

Further factor out.

Fixup.

Bad rebase.

Put `panoptic` before `instance` as it should be a superset.

* Fixing tests.

* Adding subtasks tests

+ Fixes `instance` segmentation which was broken due to default and
non kwargs arguments.

* Fix bad replace.

* Fix model-tokenizer mapping
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Support for Vilt in v1.9

* Skip if not higher or equal than 1.10

* Move test :)

* I am bad at python

* Refactor conversion function

* Remove dupe line

* Fixes

* Fixes

* Use the right variable...

* Fix last test

* Update expected values

* fix style
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* fix image2test args forwarding

* fix issues

* Proposing the update to the PR.

* Fixup.
Co-authored-by: Nicolas Patry <patry.nicolas@protonmail.com>

* Run some TF Whisper tests in subprocesses to avoid GPU OOM
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* contrastive search test updates

* make fixup

* Fix panoptic segmentation and pipeline
* Update ImageSegmentationPipeline tests and reenable test_small_model_pt
* Resolve backward compatibility issues

* Run inputs before trace

* Run inputs before trace
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* support sentencepiece for bertjapanesetokenizer

* add test vocab file for sentencepiece, bertjapanesetokenizer

* make BasicTokenizer be identical to transformers.models.bert.tokenization_bert.BasicTokenizer

* fix missing of \n in comment

* fix init argument missing in tests

* make spm_file be optional, exclude spiece.model from tests/fixtures, and add description comments

* make comment length less than 119

* apply doc style check

* update expected values for the correct TF checkpoint

* Run test

* Clean up

* fix
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* First step of PT->TF for composite models

* Update the tests

* For VisionEncoderDecoderModel

* Fix

* Fix

* Add comment

* Fix

* clean up import

* Save memory

* For (TF)EncoderDecoderModel

* For (TF)EncoderDecoderModel
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Re-enable `small_model_pt`.

Re-enable `small_model_pt`.

Enabling the current test with the current values.

Debugging the values on the CI.

More logs ? Printing doesn't work ?

Using the CI values instead. Seems to be a Pillow sensitivity.

* Update src/transformers/pipelines/image_segmentation.py
Co-authored-by: Alara Dirik <8944735+alaradirik@users.noreply.github.com>
Co-authored-by: Alara Dirik <8944735+alaradirik@users.noreply.github.com>

* Add center crop to transforms library

* Return PIL images if PIL image input by default

* Fixup and add docstring

* Trigger CI

* Update src/transformers/image_transforms.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/image_transforms.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* PR comments - move comments; unindent
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

Adding the state-of-the-art contrastive search decoding methods for the codebase of generation_utils.py (#19477)

* add: the contrastive search for generaton_utils

* add: testing scripts for contrastive search under examples/text-generation

* update the quality of codes

* revise the docstring; make the generation_contrastive_search.py scripts;

* revise the examples/pytorch/text-generation/run_generation_contrastive_search.py to the auto-APIs format

* revise the necessary documents

* fix: revise the docstring of generation_contrastive_search.py

* Fix the code indentation

* fix: revise the nits and examples in contrastive_search docstring.

* fix the copyright

* delete generation_contrastive_search.py

* revise the logic in contrastive_search

* update the intergration test and the docstring

* run the tests over

* add the slow decorate to the contrastive_search intergrate test

* add more test

* do the style, quality, consistency checks

* Create repo utils test job

* Last occurence

* Add tests for tests_fetcher

* Better filtering

* Let's learn more

* Should fix

* Should fix

* Remove debug

* Style

* WiP

WiP

WiP

WiP

WiP

WiP

WiP

WiP

WiP

* Quality

* address review comments

* Fix link

* Clean up deprecation warnings

Notes:
Changed some strings in tests to raw strings, which will change the literal content of the strings as they are fed into whatever machine handles them.
Test cases for past in the past/past_key_values switch changed/removed due to warning of impending removal

* Add PILImageResampling abstraction for PIL.Image.Resampling

Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

This PR (https://github.com/huggingface/transformers/pull/19367) introduced a few breaking changes:

- Removed an argument `mask_threshold`.
- Broke the default behavior (instance vs panoptic in the function call)
  https://github.com/huggingface/transformers/pull/19367/files#diff-60f846b86fb6a21d4caf60f5b3d593a04accb8f248de3029cccae2ff898c5bc3R119-R120
- Broke the actual masks: https://github.com/huggingface/transformers/pull/1961

This PR is the start of a handful that will aim at bringing back the old
behavior(s).

- tests should not have to specify `task` by default, unless we want to
  modify the behavior and have a lower form of segmentation running)
- `test_small_model_pt` should be working.

This specific PR starts with adding more information to the masks hash
because missing the actual mask was actual easy to miss (the hashes do
change, but it was easy to miss that one code path wasn't properly
updated).

So we go from a simple `hash` to
```
{"hash": #smaller hash, "shape": (h, w), "white_pixels": n}
```

The `shape` should help make sure the interpolation of the mask works
correctly, the `white_pixels` hopefully helps detect big regressions in
their amount when the hash gets modified.

* add return_tensors parameter for feature_extraction  w/ test

add return_tensor parameter for feature extraction

Revert "Merge branch 'feature-extraction-return-tensor' of https://github.com/ajsanjoaquin/transformers

 into feature-extraction-return-tensor"

This reverts commit d559da743b87914e111a84a98ba6dbb70d08ad88, reversing
changes made to bbef89278650c04c090beb65637a8e9572dba222.

call parameter directly
Co-authored-by: Nicolas Patry <patry.nicolas@protonmail.com>

Fixup.

Update src/transformers/pipelines/feature_extraction.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Fix the imports.

* Fixing the test by not overflowing the model capacity.
Co-authored-by: AJ San Joaquin <ajsanjoaquin@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* First draft

* Add conversion script

* Make conversion work

* Upload checkpoints

* Add final fixes

* Revert changes of conditional and deformable detr

* Fix toctree, add and remove copied from

* Use model type

* Improve docs

* Improve code example

* Update copies

* Add copied formt

* Don't update conditional detr

* Don't update deformable detr

🚨 🚨 🚨

 [Breaking change] Deformable DETR intermediate representations (#19678)

* [Breaking change] Deformable DETR intermediate representations

- Fixes naturally the `object-detection` pipeline.
- Moves from `[n_decoders, batch_size, ...]` to `[batch_size,
  n_decoders, ...]` instead.

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [Wav2Vec2] Allow user-managed Pool in Wav2Vec2ProcessorWithLM.batch_decode

* [Wav2Vec2] Add user-managed LM's pool tests and usage examples

* Improve styling
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [Wav2Vec2] Fix hyperlink references
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Improve DETR models

* Fix Deformable DETR loss and matcher

* Fixup

* Fix integration tests

* Improve variable names

* Apply suggestion

* Fix copies

* Fix DeformableDetrLoss

* Make Conditional DETR copy from Deformable DETR

* Copy from deformable detr's hungarian matcher

* Fix bug