GitLab

* Rebase ESM PR and update all file formats

* Fix test relative imports

* Add __init__.py to the test dir

* Disable gradient checkpointing

* Remove references to TFESM... FOR NOW >:|

* Remove completed TODOs from tests

* Convert docstrings to mdx, fix-copies from BERT

* fix-copies for the README and index

* Update ESM's __init__.py to the modern format

* Add to _toctree.yml

* Ensure we correctly copy the pad_token_id from the original ESM model

* Ensure we correctly copy the pad_token_id from the original ESM model

* Tiny grammar nitpicks

* Make the layer norm after embeddings an optional flag

* Make the layer norm after embeddings an optional flag

* Update the conversion script to handle other model classes

* Remove token_type_ids entirely, fix attention_masking and add checks to convert_esm.py

* Break the copied from link from BertModel.forward to remove token_type_ids

* Remove debug array saves

* Begin ESM-2 porting

* Add a hacky workaround for the precision issue in original repo

* Code cleanup

* Remove unused checkpoint conversion code

* Remove unused checkpoint conversion code

* Fix copyright notices

* Get rid of all references to the TF weights conversion

* Remove token_type_ids from the tests

* Fix test code

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update README.md
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Add credit

* Remove _ args and __ kwargs in rotary embedding

* Assertively remove asserts

* Replace einsum with torch.outer()

* Fix docstring formatting

* Remove assertions in tokenization

* Add paper citation to ESMModel docstring

* Move vocab list to single line

* Remove ESMLayer from init

* Add Facebook copyrights

* Clean up RotaryEmbedding docstring

* Fix docstring formatting

* Fix docstring for config object

* Add explanation for new config methods

* make fix-copies

* Rename all the ESM- classes to Esm-

* Update conversion script to allow pushing to hub

* Update tests to point at my repo for now

* Set config properly for tests

* Remove the gross hack that forced loss of precision in inv_freq and instead copy the data from the model being converted

* make fixup

* Update expected values for slow tests

* make fixup

* Remove EsmForCausalLM for now

* Remove EsmForCausalLM for now

* Fix padding idx test

* Updated README and docs with ESM-1b and ESM-2 separately (#19221)

* Updated README and docs with ESM-1b and ESM-2 separately

* Update READMEs, longer entry with 3 citations

* make fix-copies
Co-authored-by: Your Name <you@example.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Tom Sercu <tsercu@fb.com>
Co-authored-by: Your Name <you@example.com>

* Reorganize example folder

* Continue reorganization

* Change requirements for tests

* Final cleanup

* Finish regroup with tests all passing

* Copyright

* Requirements and readme

* Make a full link for the documentation

* Address review comments

* Apply suggestions from code review
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* Add symlink

* Reorg again

* Apply suggestions from code review
Co-authored-by: Thomas Wolf <thomwolf@users.noreply.github.com>

* Adapt title

* Update to new strucutre

* Remove test

* Update READMEs
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Thomas Wolf <thomwolf@users.noreply.github.com>

* Add BERT Loses Patience (Patience-based Early Exit)

* update model archive

* update format

* sort import

* flake8

* Add results

* full results

* align the table

* refactor to inherit

* default per gpu eval = 1

* Formatting

* Formatting

* isort

* modify readme

* Add check

* Fix format

* Fix format

* Doc strings

* ALBERT & BERT for sequence classification don't inherit from the original anymore

* Remove incorrect comments

* Remove incorrect comments

* Remove incorrect comments

* Sync up with new code

* Sync up with new code

* Add a test

* Add a test

* Add a test

* Add a test

* Add a test

* Add a test

* Finishing up!

* Rename and improve example

* Add test

* slightly faster test

* style

* This breaks remy prolly

* shorter test string

* no slow

* newdir structure

* New tree

* Style

* shorter

* docs

* clean

* Attempt future import

* more import hax