GitLab

* ignore whitspaces for hash

* reformat code

* Update README.md

* Remove all uses of six

* fix quality

* add info about megatron training

* upload models and datasets from CodeParrot organization

* upload models and datasets from CodeParrot organization

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* fix typo and add comment about codeparrot vs megatron
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Fix RESOURCE_EXHAUSTED error for large datasets on Flax example scripts

* using np.permutation for creating batch_idx

* train_samples_idx -> training_samples_idx

* fix type hints

* Fix some typos.
Signed-off-by: Yulv-git <yulvchi@qq.com>

* Fix typo.
Signed-off-by: Yulv-git <yulvchi@qq.com>

* make fixup.

* Fix all is_torch_tpu_available 

Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.21.0...v1.22.0

)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
...
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Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.21.0...v1.22.0

)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
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* deduplication draft

* update style

* update style test

* dummy test main

* rename modules

* rename functions

* return extremes in deduplicate_clusters

* update style

* cast str for gzip

* update doc string

* time processing

* use dataset map to compute minhash

* fill value for short token

* remove da map method

* update style

* use share object to multiprocess

* update style

* use f-string and minor fix
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>
Co-authored-by: Loubna Ben Allal <44069155+loubnabnl@users.noreply.github.com>

* update style

* use module parameters

* change ds_dedup to ds_filter

* save ds_dedup

* mv test to script tests

* make jaccard threshold a parameter of deduplicate_dataset

* update style

* add doc strings

* update style

* add doc string for DuplicationIndex

* save files into data dir

* update readme

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Loubna Ben Allal <44069155+loubnabnl@users.noreply.github.com>

* make near deduplication optional

* move near deduplication in README

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* use f string
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>
Co-authored-by: Loubna Ben Allal <44069155+loubnabnl@users.noreply.github.com>

Bumps [notebook](http://jupyter.org

) from 6.4.10 to 6.4.12.

---
updated-dependencies:
- dependency-name: notebook
  dependency-type: direct:production
...
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Bumps [notebook](http://jupyter.org

) from 6.4.10 to 6.4.12.

---
updated-dependencies:
- dependency-name: notebook
  dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* check

* update the RAG-end2end with new PL and RAY

* removed unwanted comments

- use CodeParrot scores of v1.1
- change evaluation command to use accelerate

* Raise RepoNotFoundError in case of 401

* Include changes from revert-17646-skip_repo_not_found

* Add a comment

* 💄 Code quality

* 💚 Update `get_from_cache` test

* 💚 Code quality & skip failing test

Bumps [cookiecutter](https://github.com/cookiecutter/cookiecutter) from 1.7.2 to 2.1.1.
- [Release notes](https://github.com/cookiecutter/cookiecutter/releases)
- [Changelog](https://github.com/cookiecutter/cookiecutter/blob/master/HISTORY.md)
- [Commits](https://github.com/cookiecutter/cookiecutter/compare/1.7.2...2.1.1

)

---
updated-dependencies:
- dependency-name: cookiecutter
  dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.8.0 to 2.8.1.
- [Release notes](https://github.com/tensorflow/tensorflow/releases)
- [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md)
- [Commits](https://github.com/tensorflow/tensorflow/compare/v2.8.0...v2.8.1

)

---
updated-dependencies:
- dependency-name: tensorflow
  dependency-type: direct:production
...
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* Make forward pass work

* More improvements

* Remove unused imports

* Remove timm dependency

* Improve loss calculation of token classifier

* Fix most tests

* Add docs

* Add model integration test

* Make all tests pass

* Add LayoutLMv3FeatureExtractor

* Improve integration test + make fixup

* Add example script

* Fix style

* Add LayoutLMv3Processor

* Fix style

* Add option to add visual labels

* Make more tokenizer tests pass

* Fix more tests

* Make more tests pass

* Fix bug and improve docs

* Fix import of processors

* Improve docstrings

* Fix toctree and improve docs

* Fix auto tokenizer

* Move tests to model folder

* Move tests to model folder

* change default behavior add_prefix_space

* add prefix space for fast

* add_prefix_spcae set to True for Fast

* no space before `unique_no_split` token

* add test to hightligh special treatment of added tokens

* fix `test_batch_encode_dynamic_overflowing` by building a long enough example

* fix `test_full_tokenizer` with add_prefix_token

* Fix tokenizer integration test

* Make the code more readable

* Add tests for LayoutLMv3Processor

* Fix style

* Add model to README and update init

* Apply suggestions from code review

* Replace asserts by value errors

* Add suggestion by @ducviet00

* Add model to doc tests

* Simplify script

* Improve README

* a step ahead to fix

* Update pair_input_test

* Make all tokenizer tests pass - phew

* Make style

* Add LayoutLMv3 to CI job

* Fix auto mapping

* Fix CI job name

* Make all processor tests pass

* Make tests of LayoutLMv2 and LayoutXLM consistent

* Add copied from statements to fast tokenizer

* Add copied from statements to slow tokenizer

* Remove add_visual_labels attribute

* Fix tests

* Add link to notebooks

* Improve docs of LayoutLMv3Processor

* Fix reference to section
Co-authored-by: SaulLu <lucilesaul.com@gmail.com>
Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>

* average loss over batches and accumulated steps for tracking

* fix layernorm weight decay

* use AdamW from Pytorch instead of Transformers

* add shuffling of sequences inside the batches

* add shuffling of sequences inside the batches

* add logging dir and reformat code

* fix lr tracking

* remove Mistral scaling

* keep Mistral scaling

* reformat code

* fix error

* fix error

* use shuffling function from Pytorch

* remove argument for shuffling batch sequences as it isn't optional

* update package versions and install accelerate from source

* remove unused package

* Update loss average over accumulated steps
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Update loss average over accumulated steps
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* use one shuffle buffer argument

* compute avg_loss in one line
Co-authored-by: Loubna ben allal <loubnabenallal@gmail.com>
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* Add information gain filtration algorithm

* Complying with black requirements

* Added author

* Fixed import order

* flake8 corrections
Co-authored-by: Javier Turek <javier.turek@intel.com>

* add pretokenization arguments

* add pretokenization script

* add support for pretokenized data

* reformat code

* fix run command for training

* fix model call from config

* remove a package

* add comments on pretokenization in the readme

* remove explicit parallelization
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* update readme
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* update readme -remove username
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* update readme -remove username
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* keep data parallelization

* reformat code

* reformat code

* update readme

* reformat code

* Update examples/research_projects/codeparrot/README.md
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>
Co-authored-by: Loubna ben allal <loubnabenallal@gmail.com>

* add new preprocessing arguments

* add new filters

* add new filters to readme

* fix config and test count, update function names and docstrings

* reformat code

* update readme

* Update readme

* rename config_test filter
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* rename few_assignments filter
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* rename tokenizer in arguments
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* rename functions and add limit_line argument for config_test filter

* update threshold for config_test filter
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>
Co-authored-by: Loubna ben allal <loubnabenallal@gmail.com>

* fixed bug run_mlm_flax_stream.py

Fixed bug caused by an update to tokenizer keys introduced in recent transformers versions (between `4.6.2` and `4.18.0`) where additional keys were introduced to the tokenizer output.

* Update run_mlm_flax_stream.py

* adding missing paranthesis

* formatted to black

* remove cols from dataset instead

* reformat to black

* moved rem. columns to map

* formatted to black
Co-authored-by: KennethEnevoldsen <kennethcenevolsen@gmail.com>

* Black preview

* Fixup too!

* Fix check copies

* Use the same version as the CI

* Bump black

Bumps [notebook](http://jupyter.org

) from 6.4.1 to 6.4.10.

---
updated-dependencies:
- dependency-name: notebook
  dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps [notebook](http://jupyter.org

) from 6.4.1 to 6.4.10.

---
updated-dependencies:
- dependency-name: notebook
  dependency-type: direct:production
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* dd parameter --config_overrides for run_mlm_wwm.py

* linter

* Avoid repeated per-lang filtering

* Language groups and logits preprocessing

* Style

* add tflops logging and fix grad accumulation

* add accelerate tracking and checkpointing

* scale loss of last batch correctly

* fix typo

* compress loss computation
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* add resume from checkpoint argument

* add load_state accelerate from checkpoint, register lr scheduler and add tflops function

* reformat code

* reformat code

* add condition on path for resume checkpoint

* combine if conditions
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* add source for tflops formula
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* begin do_init

* add params_shape_tree

* raise error if params are accessed when do_init is False

* don't allow do_init=False when keys are missing

* make shape tree a property

* assign self._params at the end

* add test for do_init

* add do_init arg to all flax models

* fix param setting

* disbale do_init for composite models

* update test

* add do_init in FlaxBigBirdForMultipleChoice

* better names and errors

* improve test

* style

* add a warning when do_init=False

* remove extra if

* set params after _required_params

* add test for from_pretrained

* do_init => _do_init

* chage warning to info

* fix typo

* add params in init_weights

* add params to gpt neo init

* add params to init_weights

* update do_init test

* Trigger CI

* Apply suggestions from code review
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* update template

* trigger CI

* style

* style

* fix template
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* Add self-training code for text-classification

* Add self-training code for text-classification

* Add self-training code for text-classification

* Add self-training code for text-classification

* Add self-training code for text-classification

* Delete strata

* add ort-trt benchmark script

* Update README.md

* ort version can be newer

* formatting

* specify ORT version

Move declaration of log streams to before tests, so that results won't get compounded on top of each other

* add simple multi gpu complet

* add human_eval_multi_gpu

* use copy strategy to distribute across gpu, to avoid padding

* add doc string

* update code style

* use task id to arrange output

* truncate input to avoid zero pad

* Stop the copy mechanism

* update style

* restore copies to scale better in distributed mode

* update style

* replace human eval

* Apply suggestions from code review

1. Tokenize all input at the same time
2. use attention_mask to get the input length
3. other small fixes
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>

* correct typo and update docstring

* update code style

* remove num sample division constraint

* remove max len calculation

* use accelerator.gather once to speed up

* use accelerate set_seed; update accelerate version

* correct gather bug
Co-authored-by: Leandro von Werra <lvwerra@users.noreply.github.com>