GitLab

* Fix esm lm head test

* make fixup

* Speed up TF postprocessing by converting to numpy before

* Fix bug that was triggered when offset_mapping was None
Co-authored-by: Patrick Deutschmann <patrick.deutschmann@dedalus.com>

* Only resize embeddings when necessary

* Add comment

* Update ESM conversion script for ESMfold

* Fix bug in ESMFold example

* make fixup and move restypes to one line

fix jit trace error for model forward sequence is not aligned with jit.trace tuple input sequence, update related doc (#19891)

* fix jit trace error for classification usecase, update related doc
Signed-off-by: Wang, Yi A <yi.a.wang@intel.com>

* add implementation in torch 1.14.0
Signed-off-by: Wang, Yi A <yi.a.wang@intel.com>

* update_doc
Signed-off-by: Wang, Yi A <yi.a.wang@intel.com>

* update_doc
Signed-off-by: Wang, Yi A <yi.a.wang@intel.com>
Signed-off-by: Wang, Yi A <yi.a.wang@intel.com>

* fix led eos_mask

* add Futur Warning

* revert uselesss cahnges

* Update src/transformers/models/led/modeling_led.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [Whisper Tokenizer] Make more user-friendly

* use property

* make indexing rigorous

* small clean-up

* tests

* skip seq2seq tests

* remove multilingual arg

* reorder args

* collapse to one function
Co-authored-by: ArthurZucker <arthur@huggingface.co>

* option to override attributes
Co-authored-by: ArthurZucker <arthur@huggingface.co>

* add to docs

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* make comment more clear
Co-authored-by: sgugger <sylvain@huggingface.co>

* don't add special tokens in get_decoder_prompt_ids

* add test for set_prefix_tokens
Co-authored-by: ArthurZucker <arthur@huggingface.co>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: sgugger <sylvain@huggingface.co>

* Add example docstring for CamembertConfig

* Add configuration_camembert to documentation_tests

* Add skip_special_tokens=True in some doctest

* For T5

* Fix for speech_to_text.mdx
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Show versions

* check

* store outputs

* revert
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

🚨 🚨 🚨 Fix Issue 15003: SentencePiece Tokenizers Not Adding Special Tokens in `convert_tokens_to_string` (#15775)

* Add test for SentencePiece not adding special tokens to strings

* Add SentencePieceStringConversionMixin to fix issue 15003

* Fix conversion from tokens to string for most SentencePiece tokenizers

Tokenizers fixed:
- AlbertTokenizer
- BarthezTokenizer
- CamembertTokenizer
- FNetTokenizer
- M2M100Tokenizer
- MBart50Tokenizer
- PegasusTokenizer
- Speech2TextTokenizer

* Fix MarianTokenizer, adjust SentencePiece test to accomodate vocab

* Fix DebertaV2Tokenizer

* Ignore LayoutXLMTokenizer in SentencePiece string conversion test

* Run 'make style' and 'make quality'

* Clean convert_tokens_to_string test

Instead of explicitly ignoring LayoutXLMTokenizer in the test,
override the test in LayoutLMTokenizationTest and do nothing in it.

* Remove commented out code

* Improve robustness of convert_tokens_to_string test

Instead of comparing lengths of re-tokenized text and input_ids,
check that converting all special tokens to string yields a string
with all special tokens.

* Inline and remove SentencePieceStringConversionMixin

The convert_tokens_to_string method is now implemented
in each relevant SentencePiece tokenizer.

* Run 'make style' and 'make quality'

* Revert removal of space in convert_tokens_to_string

* Remove redundant import

* Revert test text to original

* Uncomment the lowercasing of the reverse_text variable

* Mimic Rust tokenizer behavior for tokenizers

- Albert
- Barthez
- Camembert
- MBart50
- T5

* Fix accidentally skipping test in wrong tokenizer

* Add test for equivalent Rust and slow tokenizer behavior

* Override _decode in BigBirdTokenizer to mimic Rust behavior

* Override _decode in FNetTokenizer to mimic Rust behavior

* Override _decode in XLNetTokenizer to mimic Rust behavior

* Remove unused 're' import

* Update DebertaV2Tokenizer to mimic Rust tokenizer

* Deberta tokenizer now behaves like Albert and its `convert_tokens_to_string` is not tested.

* Ignore problematic tests in Deberta V2

* Add comment on why the Deberta V2 tests are skipped

* Fix doctest
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* part 1

* part 2

* part 3

* fix

* For CANINE

* For ESMFold
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Add example docstring for DebertaV2Config

* Add DebertaV2Config to documentation_tests

* Fix mistake with directory name

Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Add CLIP image processor

* Crop size as dict too

* Update warning

* Actually use logger this time

* Normalize doesn't change dtype of input

* Add perceiver image processor

* Tidy up

* Add DPT image processor

* Add Vilt image processor

* Tidy up

* Add poolformer image processor

* Tidy up

* Add LayoutLM v2 and v3 imsge processors

* Tidy up

* Add Flava image processor

* Tidy up

* Add deit image processor

* Tidy up

* Add ConvNext image processor

* Tidy up

* Add levit image processor

* Add segformer image processor

* Add in post processing

* Fix up

* Add ImageGPT image processor

* Fixup

* Add mobilevit image processor

* Tidy up

* Add postprocessing

* Fixup

* Add VideoMAE image processor

* Tidy up

* Add ImageGPT image processor

* Fixup

* Add ViT image processor

* Tidy up

* Add beit image processor

* Add mobilevit image processor

* Tidy up

* Add postprocessing

* Fixup

* Fix up

* Fix flava and remove tree module

* Fix image classification pipeline failing tests

* Update feature extractor in trainer scripts

* Update pad_if_smaller to accept tuple and int size

* Update for image segmentation pipeline

* Update src/transformers/models/perceiver/image_processing_perceiver.py
Co-authored-by: Alara Dirik <8944735+alaradirik@users.noreply.github.com>

* Update src/transformers/image_processing_utils.py
Co-authored-by: NielsRogge <48327001+NielsRogge@users.noreply.github.com>

* Update src/transformers/models/beit/image_processing_beit.py
Co-authored-by: NielsRogge <48327001+NielsRogge@users.noreply.github.com>

* PR comments - docstrings; remove accidentally added resize; var names

* Update docstrings

* Add exception if size is not in the right format

* Fix exception check

* Fix up

* Use shortest_edge in tuple in script
Co-authored-by: Alara Dirik <8944735+alaradirik@users.noreply.github.com>
Co-authored-by: NielsRogge <48327001+NielsRogge@users.noreply.github.com>

* clean up

* For backward compatibility

* clean up

* Same changes for more models
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Use beam search functionality; Add extra outputs and test

* Add full tests for contrastive search

* Add error message on unconventional cache format

* add layoutlmv3 resource

* add layoutlmv2 resources

* fix button

* add resources for bert

* add course chapters

* apply reviews

* add pipeline icons and community resource

* fix buttons

* Add ESMFold code sample

* sorry sylvain

* make fixup

* sorry sylvain again

* Add japanese translated README.md

* Add README_ja.md link

* Add japanese transkate to check_copies.py

* Add guide to Japanese README.md

* Update README_ja.md
Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>

* Update utils/check_copies.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Added onnx config whisper

* added whisper support onnx

* add audio input data

* added whisper support onnx

* fixed the seqlength value

* Updated the whisper onnx ocnfig

* restore files to old version

* removed attention mask from inputs

* Updated get_dummy_input_onnxruntime docstring

* Updated relative imports and token generation

* update docstring

* initial commit

* First draft that gets outputs without crashing!

* Add all the ported openfold dependencies

* testing

* Restructure config files for ESMFold

* Debugging to find output discrepancies

* Mainly style

* Make model runnable without extra deps

* Remove utils and merge them to the modeling file

* Use correct gelu and remove some debug prints

* More cleanup

* Update esm docs

* Update conversion script to support ESMFold properly

* Port some top-level changes from ESMFold repo

* Expand EsmFold docstrings

* Make attention_mask optional (default to all 1s)

* Add inference test for ESMFold

* Use config and not n kwargs

* Add modeling output class

* Remove einops

* Remove chunking in ESM FFN

* Update tests for ESMFold

* Quality

* REpo consistency

* Remove tree dependency from ESMFold

* make fixup

* Add an error in case my structure map function breaks later

* Remove needless code

* Stop auto-casting the LM to float16 so CPU tests pass

* Stop auto-casting the LM to float16 so CPU tests pass

* Final test updates

* Split test file

* Copyright and quality

* Unpin PyTorch to see built doc

* Fix config file to_dict() method

* Add some docstrings to the output

* Skip TF checkpoint tests for ESM until we reupload those

* make fixup

* More docstrings

* Unpin to get even with main

* Flag example to write
Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>

Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>

* pin torch to < 1.13

* pin torch to < 1.13
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>