Merge pull request #254 from huggingface/python_2

Adding OpenAI GPT and Transformer-XL models, compatibility with Python 2

.circleci/config.yml

 version: 2
 jobs:
-    build:
+    build_py3:
         working_directory: ~/pytorch-pretrained-BERT
         docker:
-            - image: circleci/python:3.7
+            - image: circleci/python:3.5
         steps:
             - checkout
             - run: sudo pip install --progress-bar off .
-            - run: sudo pip install pytest
+            - run: sudo pip install pytest ftfy spacy
+            - run: sudo python -m spacy download en
             - run: python -m pytest -sv tests/
+    build_py2:
+        working_directory: ~/pytorch-pretrained-BERT
+        docker:
+            - image: circleci/python:2.7
+        steps:
+            - checkout
+            - run: sudo pip install --progress-bar off .
+            - run: sudo pip install pytest spacy
+            - run: sudo pip install ftfy==4.4.3
+            - run: sudo python -m spacy download en
+            - run: python -m pytest -sv tests/
+workflows:
+  version: 2
+  build_and_test:
+    jobs:
+      - build_py3
+      - build_py2
\ No newline at end of file

examples/extract_features.py

@@ -80,10 +80,10 @@ def convert_examples_to_features(examples, seq_length, tokenizer):
         # The convention in BERT is:
         # (a) For sequence pairs:
         #  tokens:   [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
-        #  type_ids: 0   0  0    0    0     0       0 0    1  1  1  1   1 1
+        #  type_ids:   0   0  0    0    0     0      0   0    1  1  1   1  1   1
         # (b) For single sequences:
         #  tokens:   [CLS] the dog is hairy . [SEP]
-        #  type_ids: 0   0   0   0  0     0 0
+        #  type_ids:   0   0   0   0  0     0   0
         #
         # Where "type_ids" are used to indicate whether this is the first
         # sequence or the second sequence. The embedding vectors for `type=0` and

examples/run_classifier.py

@@ -15,26 +15,26 @@
 # limitations under the License.
 """BERT finetuning runner."""
 
-from __future__ import absolute_import
-from __future__ import division
-from __future__ import print_function
+from __future__ import absolute_import, division, print_function
 
+import argparse
 import csv
-import os
 import logging
-import argparse
+import os
 import random
-from tqdm import tqdm, trange
+import sys
 
 import numpy as np
 import torch
-from torch.utils.data import TensorDataset, DataLoader, RandomSampler, SequentialSampler
+from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler,
+                              TensorDataset)
 from torch.utils.data.distributed import DistributedSampler
+from tqdm import tqdm, trange
 
+from pytorch_pretrained_bert.file_utils import PYTORCH_PRETRAINED_BERT_CACHE
+from pytorch_pretrained_bert.modeling import BertForSequenceClassification, BertConfig, WEIGHTS_NAME, CONFIG_NAME
 from pytorch_pretrained_bert.tokenization import BertTokenizer
-from pytorch_pretrained_bert.modeling import BertForSequenceClassification
 from pytorch_pretrained_bert.optimization import BertAdam, warmup_linear
-from pytorch_pretrained_bert.file_utils import PYTORCH_PRETRAINED_BERT_CACHE
 
 logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
                     datefmt = '%m/%d/%Y %H:%M:%S',
@@ -91,10 +91,12 @@ class DataProcessor(object):
     @classmethod
     def _read_tsv(cls, input_file, quotechar=None):
         """Reads a tab separated value file."""
-        with open(input_file, "r", encoding='utf-8') as f:
+        with open(input_file, "r") as f:
             reader = csv.reader(f, delimiter="\t", quotechar=quotechar)
             lines = []
             for line in reader:
+                if sys.version_info[0] == 2:
+                    line = list(unicode(cell, 'utf-8') for cell in line)
                 lines.append(line)
             return lines
 
@@ -321,6 +323,10 @@ def main():
                         help="The output directory where the model predictions and checkpoints will be written.")
 
     ## Other parameters
+    parser.add_argument("--cache_dir",
+                        default="",
+                        type=str,
+                        help="Where do you want to store the pre-trained models downloaded from s3")
     parser.add_argument("--max_seq_length",
                         default=128,
                         type=int,
@@ -380,9 +386,17 @@ def main():
                         help="Loss scaling to improve fp16 numeric stability. Only used when fp16 set to True.\n"
                              "0 (default value): dynamic loss scaling.\n"
                              "Positive power of 2: static loss scaling value.\n")
-
+    parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.")
+    parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.")
     args = parser.parse_args()
 
+    if args.server_ip and args.server_port:
+        # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
+        import ptvsd
+        print("Waiting for debugger attach")
+        ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
+        ptvsd.wait_for_attach()
+
     processors = {
         "cola": ColaProcessor,
         "mnli": MnliProcessor,
@@ -424,7 +438,8 @@ def main():
 
     if os.path.exists(args.output_dir) and os.listdir(args.output_dir) and args.do_train:
         raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir))
-    os.makedirs(args.output_dir, exist_ok=True)
+    if not os.path.exists(args.output_dir):
+        os.makedirs(args.output_dir)
 
     task_name = args.task_name.lower()
 
@@ -447,8 +462,9 @@ def main():
             num_train_optimization_steps = num_train_optimization_steps // torch.distributed.get_world_size()
 
     # Prepare model
+    cache_dir = args.cache_dir if args.cache_dir else os.path.join(PYTORCH_PRETRAINED_BERT_CACHE, 'distributed_{}'.format(args.local_rank))
     model = BertForSequenceClassification.from_pretrained(args.bert_model,
-              cache_dir=PYTORCH_PRETRAINED_BERT_CACHE / 'distributed_{}'.format(args.local_rank),
+              cache_dir=cache_dir,
               num_labels = num_labels)
     if args.fp16:
         model.half()
@@ -545,15 +561,21 @@ def main():
                     optimizer.zero_grad()
                     global_step += 1
 
-    # Save a trained model
-    model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
-    output_model_file = os.path.join(args.output_dir, "pytorch_model.bin")
     if args.do_train:
+        # Save a trained model and the associated configuration
+        model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
+        output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME)
         torch.save(model_to_save.state_dict(), output_model_file)
-
-    # Load a trained model that you have fine-tuned
-    model_state_dict = torch.load(output_model_file)
-    model = BertForSequenceClassification.from_pretrained(args.bert_model, state_dict=model_state_dict, num_labels=num_labels)
+        output_config_file = os.path.join(args.output_dir, CONFIG_NAME)
+        with open(output_config_file, 'w') as f:
+            f.write(model_to_save.config.to_json_string())
+
+        # Load a trained model and config that you have fine-tuned
+        config = BertConfig(output_config_file)
+        model = BertForSequenceClassification(config, num_labels=num_labels)
+        model.load_state_dict(torch.load(output_model_file))
+    else:
+        model = BertForSequenceClassification.from_pretrained(args.bert_model, num_labels=num_labels)
     model.to(device)
 
     if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0):

examples/run_lm_finetuning.py

@@ -15,22 +15,22 @@
 # limitations under the License.
 """BERT finetuning runner."""
 
-from __future__ import absolute_import
-from __future__ import division
-from __future__ import print_function
+from __future__ import absolute_import, division, print_function, unicode_literals
 
-import os
-import logging
 import argparse
-from tqdm import tqdm, trange
+import logging
+import os
+import random
+from io import open
 
 import numpy as np
 import torch
-from torch.utils.data import DataLoader, RandomSampler
+from torch.utils.data import DataLoader, Dataset, RandomSampler
 from torch.utils.data.distributed import DistributedSampler
+from tqdm import tqdm, trange
 
-from pytorch_pretrained_bert.tokenization import BertTokenizer
 from pytorch_pretrained_bert.modeling import BertForPreTraining
+from pytorch_pretrained_bert.tokenization import BertTokenizer
 from pytorch_pretrained_bert.optimization import BertAdam, warmup_linear
 
 from torch.utils.data import Dataset
@@ -179,16 +179,16 @@ class BERTDataset(Dataset):
             if self.line_buffer is None:
                 # read first non-empty line of file
                 while t1 == "" :
-                    t1 = self.file.__next__().strip()
-                    t2 = self.file.__next__().strip()
+                    t1 = next(self.file).strip()
+                    t2 = next(self.file).strip()
             else:
                 # use t2 from previous iteration as new t1
                 t1 = self.line_buffer
-                t2 = self.file.__next__().strip()
+                t2 = next(self.file).strip()
                 # skip empty rows that are used for separating documents and keep track of current doc id
                 while t2 == "" or t1 == "":
-                    t1 = self.file.__next__().strip()
-                    t2 = self.file.__next__().strip()
+                    t1 = next(self.file).strip()
+                    t2 = next(self.file).strip()
                     self.current_doc = self.current_doc+1
             self.line_buffer = t2
 
@@ -222,15 +222,15 @@ class BERTDataset(Dataset):
     def get_next_line(self):
         """ Gets next line of random_file and starts over when reaching end of file"""
         try:
-            line = self.random_file.__next__().strip()
+            line = next(self.random_file).strip()
             #keep track of which document we are currently looking at to later avoid having the same doc as t1
             if line == "":
                 self.current_random_doc = self.current_random_doc + 1
-                line = self.random_file.__next__().strip()
+                line = next(self.random_file).strip()
         except StopIteration:
             self.random_file.close()
             self.random_file = open(self.corpus_path, "r", encoding=self.encoding)
-            line = self.random_file.__next__().strip()
+            line = next(self.random_file).strip()
         return line
 
 
@@ -419,6 +419,7 @@ def main():
                         help="The output directory where the model checkpoints will be written.")
 
     ## Other parameters
+    parser.add_argument("--do_lower_case", action='store_true', help="Set this flag if you are using an uncased model.")
     parser.add_argument("--max_seq_length",
                         default=128,
                         type=int,
@@ -506,7 +507,8 @@ def main():
 
     if os.path.exists(args.output_dir) and os.listdir(args.output_dir):
         raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir))
-    os.makedirs(args.output_dir, exist_ok=True)
+    if not os.path.exists(args.output_dir):
+        os.makedirs(args.output_dir)
 
     tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case)
 
@@ -575,7 +577,7 @@ def main():
         if args.local_rank == -1:
             train_sampler = RandomSampler(train_dataset)
         else:
-            #TODO: check if this works with current data generator from disk that relies on file.__next__
+            #TODO: check if this works with current data generator from disk that relies on next(file)
             # (it doesn't return item back by index)
             train_sampler = DistributedSampler(train_dataset)
         train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
@@ -641,4 +643,4 @@ def accuracy(out, labels):
 
 
 if __name__ == "__main__":
-    main()
\ No newline at end of file
+    main()

examples/run_openai_gpt.py

+# coding=utf-8
+# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HugginFace Inc. team.
+# Copyright (c) 2018, NVIDIA CORPORATION.  All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+""" OpenAI GPT model fine-tuning script.
+    Adapted from https://github.com/huggingface/pytorch-openai-transformer-lm/blob/master/train.py
+    It self adapted from https://github.com/openai/finetune-transformer-lm/blob/master/train.py
+
+    This script with default values fine-tunes and evaluate a pretrained OpenAI GPT on the RocStories dataset
+"""
+import argparse
+import os
+import csv
+import random
+import logging
+from tqdm import tqdm, trange
+
+import numpy as np
+import torch
+from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler,
+                              TensorDataset)
+
+from pytorch_pretrained_bert import OpenAIGPTDoubleHeadsModel, OpenAIGPTTokenizer, OpenAIAdam, cached_path
+
+ROCSTORIES_URL = "https://s3.amazonaws.com/datasets.huggingface.co/ROCStories.tar.gz"
+
+logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
+                    datefmt = '%m/%d/%Y %H:%M:%S',
+                    level = logging.INFO)
+logger = logging.getLogger(__name__)
+
+def accuracy(out, labels):
+    outputs = np.argmax(out, axis=1)
+    return np.sum(outputs == labels)
+
+def load_rocstories_dataset(dataset_path):
+    """ Output a list of tuples(story, 1st continuation, 2nd continuation, label) """
+    with open(dataset_path, encoding='utf_8') as f:
+        f = csv.reader(f)
+        output = []
+        next(f) # skip the first line
+        for line in tqdm(f):
+            output.append((' '.join(line[1:5]), line[5], line[6], int(line[-1])-1))
+    return output
+
+def pre_process_datasets(encoded_datasets, input_len, cap_length, start_token, delimiter_token, clf_token):
+    """ Pre-process datasets containing lists of tuples(story, 1st continuation, 2nd continuation, label)
+
+        To Transformer inputs of shape (n_batch, n_alternative, length) comprising for each batch, continuation:
+        input_ids[batch, alternative, :] = [start_token] + story[:cap_length] + [delimiter_token] + cont1[:cap_length] + [clf_token]
+    """
+    tensor_datasets = []
+    for dataset in encoded_datasets:
+        n_batch = len(dataset)
+        input_ids = np.zeros((n_batch, 2, input_len), dtype=np.int64)
+        mc_token_ids = np.zeros((n_batch, 2), dtype=np.int64)
+        lm_labels = np.full((n_batch, 2, input_len), fill_value=-1, dtype=np.int64)
+        mc_labels = np.zeros((n_batch,), dtype=np.int64)
+        for i, (story, cont1, cont2, mc_label), in enumerate(dataset):
+            with_cont1 = [start_token] + story[:cap_length] + [delimiter_token] + cont1[:cap_length] + [clf_token]
+            with_cont2 = [start_token] + story[:cap_length] + [delimiter_token] + cont2[:cap_length] + [clf_token]
+            input_ids[i, 0, :len(with_cont1)] = with_cont1
+            input_ids[i, 1, :len(with_cont2)] = with_cont2
+            mc_token_ids[i, 0] = len(with_cont1) - 1
+            mc_token_ids[i, 1] = len(with_cont2) - 1
+            lm_labels[i, 0, :len(with_cont1)-1] = with_cont1[1:]
+            lm_labels[i, 1, :len(with_cont2)-1] = with_cont2[1:]
+            mc_labels[i] = mc_label
+        all_inputs = (input_ids, mc_token_ids, lm_labels, mc_labels)
+        tensor_datasets.append(tuple(torch.tensor(t) for t in all_inputs))
+    return tensor_datasets
+
+def main():
+    parser = argparse.ArgumentParser()
+    parser.add_argument('--model_name', type=str, default='openai-gpt',
+                        help='pretrained model name')
+    parser.add_argument("--do_train", action='store_true', help="Whether to run training.")
+    parser.add_argument("--do_eval", action='store_true', help="Whether to run eval on the dev set.")
+    parser.add_argument("--output_dir", default=None, type=str, required=True,
+                        help="The output directory where the model predictions and checkpoints will be written.")
+    parser.add_argument('--train_dataset', type=str, default='')
+    parser.add_argument('--eval_dataset', type=str, default='')
+    parser.add_argument('--seed', type=int, default=42)
+    parser.add_argument('--num_train_epochs', type=int, default=3)
+    parser.add_argument('--train_batch_size', type=int, default=8)
+    parser.add_argument('--eval_batch_size', type=int, default=16)
+    parser.add_argument('--max_grad_norm', type=int, default=1)
+    parser.add_argument('--learning_rate', type=float, default=6.25e-5)
+    parser.add_argument('--warmup_proportion', type=float, default=0.002)
+    parser.add_argument('--lr_schedule', type=str, default='warmup_linear')
+    parser.add_argument('--weight_decay', type=float, default=0.01)
+    parser.add_argument('--lm_coef', type=float, default=0.9)
+    parser.add_argument('--n_valid', type=int, default=374)
+
+    parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.")
+    parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.")
+    args = parser.parse_args()
+    print(args)
+
+    if args.server_ip and args.server_port:
+        # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
+        import ptvsd
+        print("Waiting for debugger attach")
+        ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
+        ptvsd.wait_for_attach()
+
+    random.seed(args.seed)
+    np.random.seed(args.seed)
+    torch.manual_seed(args.seed)
+    torch.cuda.manual_seed_all(args.seed)
+
+    device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
+    n_gpu = torch.cuda.device_count()
+    logger.info("device: {}, n_gpu {}".format(device, n_gpu))
+
+    if not args.do_train and not args.do_eval:
+        raise ValueError("At least one of `do_train` or `do_eval` must be True.")
+
+    if not os.path.exists(args.output_dir):
+        os.makedirs(args.output_dir)
+
+    # Load tokenizer and model
+    # This loading functions also add new tokens and embeddings called `special tokens`
+    # These new embeddings will be fine-tuned on the RocStories dataset
+    special_tokens = ['_start_', '_delimiter_', '_classify_']
+    tokenizer = OpenAIGPTTokenizer.from_pretrained(args.model_name, special_tokens=special_tokens)
+    special_tokens_ids = list(tokenizer.convert_tokens_to_ids(token) for token in special_tokens)
+    model = OpenAIGPTDoubleHeadsModel.from_pretrained(args.model_name, num_special_tokens=len(special_tokens))
+    model.to(device)
+
+    # Load and encode the datasets
+    if not args.train_dataset and not args.eval_dataset:
+        roc_stories = cached_path(ROCSTORIES_URL)
+    def tokenize_and_encode(obj):
+        """ Tokenize and encode a nested object """
+        if isinstance(obj, str):
+            return tokenizer.convert_tokens_to_ids(tokenizer.tokenize(obj))
+        elif isinstance(obj, int):
+            return obj
+        return list(tokenize_and_encode(o) for o in obj)
+    logger.info("Encoding dataset...")
+    train_dataset = load_rocstories_dataset(args.train_dataset)
+    eval_dataset = load_rocstories_dataset(args.eval_dataset)
+    datasets = (train_dataset, eval_dataset)
+    encoded_datasets = tokenize_and_encode(datasets)
+
+    # Compute the mex input length for the Transformer
+    max_length = model.config.n_positions // 2 - 2
+    input_length = max(len(story[:max_length]) + max(len(cont1[:max_length]), len(cont2[:max_length])) + 3  \
+                           for dataset in encoded_datasets for story, cont1, cont2, _ in dataset)
+    input_length = min(input_length, model.config.n_positions)  # Max size of input for the pre-trained model
+
+    # Prepare inputs tensors and dataloaders
+    tensor_datasets = pre_process_datasets(encoded_datasets, input_length, max_length, *special_tokens_ids)
+    train_tensor_dataset, eval_tensor_dataset = tensor_datasets[0], tensor_datasets[1]
+
+    train_data = TensorDataset(*train_tensor_dataset)
+    train_sampler = RandomSampler(train_data)
+    train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size)
+
+    eval_data = TensorDataset(*eval_tensor_dataset)
+    eval_sampler = SequentialSampler(eval_data)
+    eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size)
+
+    # Prepare optimizer
+    param_optimizer = list(model.named_parameters())
+    no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight']
+    optimizer_grouped_parameters = [
+        {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01},
+        {'params': [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], 'weight_decay': 0.0}
+        ]
+    num_train_optimization_steps = len(train_data) * args.num_train_epochs // args.train_batch_size
+    optimizer = OpenAIAdam(optimizer_grouped_parameters,
+                           lr=args.learning_rate,
+                           warmup=args.warmup_proportion,
+                           max_grad_norm=args.max_grad_norm,
+                           weight_decay=args.weight_decay,
+                           t_total=num_train_optimization_steps)
+
+    if args.do_train:
+        nb_tr_steps, tr_loss, exp_average_loss = 0, 0, None
+        model.train()
+        for _ in trange(int(args.num_train_epochs), desc="Epoch"):
+            tr_loss = 0
+            nb_tr_steps = 0
+            tqdm_bar = tqdm(train_dataloader, desc="Training")
+            for step, batch in enumerate(tqdm_bar):
+                batch = tuple(t.to(device) for t in batch)
+                input_ids, mc_token_ids, lm_labels, mc_labels = batch
+                losses = model(input_ids, mc_token_ids, lm_labels, mc_labels)
+                loss = args.lm_coef * losses[0] + losses[1]
+                loss.backward()
+                optimizer.step()
+                tr_loss += loss.item()
+                exp_average_loss = loss.item() if exp_average_loss is None else 0.7*exp_average_loss+0.3*loss.item()
+                nb_tr_steps += 1
+                tqdm_bar.desc = "Training loss: {:.2e} lr: {:.2e}".format(exp_average_loss, optimizer.get_lr()[0])
+
+    # Save a trained model
+    if args.do_train:
+        model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
+        output_model_file = os.path.join(args.output_dir, "pytorch_model.bin")
+        config = model.config
+        torch.save(model_to_save.state_dict(), output_model_file)
+
+        # Load a trained model that you have fine-tuned
+        model_state_dict = torch.load(output_model_file)
+        model = OpenAIGPTDoubleHeadsModel(config)
+        model.load_state_dict(model_state_dict)
+        model.to(device)
+
+    if args.do_eval:
+        model.eval()
+        eval_loss, eval_accuracy = 0, 0
+        nb_eval_steps, nb_eval_examples = 0, 0
+        for batch in tqdm(eval_dataloader, desc="Evaluating"):
+            batch = tuple(t.to(device) for t in batch)
+            input_ids, mc_token_ids, lm_labels, mc_labels = batch
+            with torch.no_grad():
+                _, mc_loss = model(input_ids, mc_token_ids, lm_labels, mc_labels)
+                _, mc_logits = model(input_ids, mc_token_ids)
+
+            mc_logits = mc_logits.detach().cpu().numpy()
+            mc_labels = mc_labels.to('cpu').numpy()
+            tmp_eval_accuracy = accuracy(mc_logits, mc_labels)
+
+            eval_loss += mc_loss.mean().item()
+            eval_accuracy += tmp_eval_accuracy
+
+            nb_eval_examples += input_ids.size(0)
+            nb_eval_steps += 1
+
+        eval_loss = eval_loss / nb_eval_steps
+        eval_accuracy = eval_accuracy / nb_eval_examples
+        train_loss = tr_loss/nb_tr_steps if args.do_train else None
+        result = {'eval_loss': eval_loss,
+                  'eval_accuracy': eval_accuracy,
+                  'train_loss': train_loss}
+
+        output_eval_file = os.path.join(args.output_dir, "eval_results.txt")
+        with open(output_eval_file, "w") as writer:
+            logger.info("***** Eval results *****")
+            for key in sorted(result.keys()):
+                logger.info("  %s = %s", key, str(result[key]))
+                writer.write("%s = %s\n" % (key, str(result[key])))
+
+if __name__ == '__main__':
+    main()

examples/run_squad.py

@@ -15,29 +15,36 @@
 # limitations under the License.
 """Run BERT on SQuAD."""
 
-from __future__ import absolute_import
-from __future__ import division
-from __future__ import print_function
+from __future__ import absolute_import, division, print_function
 
 import argparse
 import collections
-import logging
 import json
+import logging
 import math
 import os
 import random
-import pickle
-from tqdm import tqdm, trange
+import sys
+from io import open
 
 import numpy as np
 import torch
-from torch.utils.data import TensorDataset, DataLoader, RandomSampler, SequentialSampler
+from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler,
+                              TensorDataset)
 from torch.utils.data.distributed import DistributedSampler
+from tqdm import tqdm, trange
 
-from pytorch_pretrained_bert.tokenization import whitespace_tokenize, BasicTokenizer, BertTokenizer
-from pytorch_pretrained_bert.modeling import BertForQuestionAnswering
-from pytorch_pretrained_bert.optimization import BertAdam, warmup_linear
 from pytorch_pretrained_bert.file_utils import PYTORCH_PRETRAINED_BERT_CACHE
+from pytorch_pretrained_bert.modeling import BertForQuestionAnswering, BertConfig, WEIGHTS_NAME, CONFIG_NAME
+from pytorch_pretrained_bert.optimization import BertAdam, warmup_linear
+from pytorch_pretrained_bert.tokenization import (BasicTokenizer,
+                                                  BertTokenizer,
+                                                  whitespace_tokenize)
+
+if sys.version_info[0] == 2:
+    import cPickle as pickle
+else:
+    import pickle
 
 logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
                     datefmt = '%m/%d/%Y %H:%M:%S',
@@ -863,7 +870,8 @@ def main():
 
     if os.path.exists(args.output_dir) and os.listdir(args.output_dir) and args.do_train:
         raise ValueError("Output directory () already exists and is not empty.")
-    os.makedirs(args.output_dir, exist_ok=True)
+    if not os.path.exists(args.output_dir):
+        os.makedirs(args.output_dir)
 
     tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case)
 
@@ -879,7 +887,7 @@ def main():
 
     # Prepare model
     model = BertForQuestionAnswering.from_pretrained(args.bert_model,
-                cache_dir=PYTORCH_PRETRAINED_BERT_CACHE / 'distributed_{}'.format(args.local_rank))
+                cache_dir=os.path.join(PYTORCH_PRETRAINED_BERT_CACHE, 'distributed_{}'.format(args.local_rank)))
 
     if args.fp16:
         model.half()
@@ -909,7 +917,7 @@ def main():
 
     if args.fp16:
         try:
-            from apex.optimizer import FP16_Optimizer
+            from apex.optimizers import FP16_Optimizer
             from apex.optimizers import FusedAdam
         except ImportError:
             raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use distributed and fp16 training.")
@@ -993,14 +1001,19 @@ def main():
                     optimizer.zero_grad()
                     global_step += 1
 
-    # Save a trained model
-    model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
-    output_model_file = os.path.join(args.output_dir, "pytorch_model.bin")
     if args.do_train:
+        # Save a trained model and the associated configuration
+        model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
+        output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME)
         torch.save(model_to_save.state_dict(), output_model_file)
-        # Load a trained model that you have fine-tuned
-        model_state_dict = torch.load(output_model_file)
-        model = BertForQuestionAnswering.from_pretrained(args.bert_model, state_dict=model_state_dict)
+        output_config_file = os.path.join(args.output_dir, CONFIG_NAME)
+        with open(output_config_file, 'w') as f:
+            f.write(model_to_save.config.to_json_string())
+
+        # Load a trained model and config that you have fine-tuned
+        config = BertConfig(output_config_file)
+        model = BertForQuestionAnswering(config)
+        model.load_state_dict(torch.load(output_model_file))
     else:
         model = BertForQuestionAnswering.from_pretrained(args.bert_model)
 

examples/run_swag.py

@@ -15,22 +15,25 @@
 # limitations under the License.
 """BERT finetuning runner."""
 
+import argparse
+import csv
 import logging
 import os
-import argparse
 import random
-from tqdm import tqdm, trange
-import csv
+import sys
+from io import open
 
 import numpy as np
 import torch
-from torch.utils.data import TensorDataset, DataLoader, RandomSampler, SequentialSampler
+from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler,
+                              TensorDataset)
 from torch.utils.data.distributed import DistributedSampler
+from tqdm import tqdm, trange
 
-from pytorch_pretrained_bert.tokenization import BertTokenizer
+from pytorch_pretrained_bert.file_utils import PYTORCH_PRETRAINED_BERT_CACHE
 from pytorch_pretrained_bert.modeling import BertForMultipleChoice
 from pytorch_pretrained_bert.optimization import BertAdam, warmup_linear
-from pytorch_pretrained_bert.file_utils import PYTORCH_PRETRAINED_BERT_CACHE
+from pytorch_pretrained_bert.tokenization import BertTokenizer
 
 logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
                     datefmt = '%m/%d/%Y %H:%M:%S',
@@ -65,17 +68,17 @@ class SwagExample(object):
 
     def __repr__(self):
         l = [
-            f"swag_id: {self.swag_id}",
-            f"context_sentence: {self.context_sentence}",
-            f"start_ending: {self.start_ending}",
-            f"ending_0: {self.endings[0]}",
-            f"ending_1: {self.endings[1]}",
-            f"ending_2: {self.endings[2]}",
-            f"ending_3: {self.endings[3]}",
+            "swag_id: {}".format(self.swag_id),
+            "context_sentence: {}".format(self.context_sentence),
+            "start_ending: {}".format(self.start_ending),
+            "ending_0: {}".format(self.endings[0]),
+            "ending_1: {}".format(self.endings[1]),
+            "ending_2: {}".format(self.endings[2]),
+            "ending_3: {}".format(self.endings[3]),
         ]
 
         if self.label is not None:
-            l.append(f"label: {self.label}")
+            l.append("label: {}".format(self.label))
 
         return ", ".join(l)
 
@@ -102,7 +105,11 @@ class InputFeatures(object):
 def read_swag_examples(input_file, is_training):
     with open(input_file, 'r', encoding='utf-8') as f:
         reader = csv.reader(f)
-        lines = list(reader)
+        lines = []
+        for line in reader:
+            if sys.version_info[0] == 2:
+                line = list(unicode(cell, 'utf-8') for cell in line)
+            lines.append(line)
 
     if is_training and lines[0][-1] != 'label':
         raise ValueError(
@@ -184,15 +191,15 @@ def convert_examples_to_features(examples, tokenizer, max_seq_length,
         label = example.label
         if example_index < 5:
             logger.info("*** Example ***")
-            logger.info(f"swag_id: {example.swag_id}")
+            logger.info("swag_id: {}".format(example.swag_id))
             for choice_idx, (tokens, input_ids, input_mask, segment_ids) in enumerate(choices_features):
-                logger.info(f"choice: {choice_idx}")
-                logger.info(f"tokens: {' '.join(tokens)}")
-                logger.info(f"input_ids: {' '.join(map(str, input_ids))}")
-                logger.info(f"input_mask: {' '.join(map(str, input_mask))}")
-                logger.info(f"segment_ids: {' '.join(map(str, segment_ids))}")
+                logger.info("choice: {}".format(choice_idx))
+                logger.info("tokens: {}".format(' '.join(tokens)))
+                logger.info("input_ids: {}".format(' '.join(map(str, input_ids))))
+                logger.info("input_mask: {}".format(' '.join(map(str, input_mask))))
+                logger.info("segment_ids: {}".format(' '.join(map(str, segment_ids))))
             if is_training:
-                logger.info(f"label: {label}")
+                logger.info("label: {}".format(label))
 
         features.append(
             InputFeatures(
@@ -344,7 +351,8 @@ def main():
 
     if os.path.exists(args.output_dir) and os.listdir(args.output_dir):
         raise ValueError("Output directory ({}) already exists and is not empty.".format(args.output_dir))
-    os.makedirs(args.output_dir, exist_ok=True)
+    if not os.path.exists(args.output_dir):
+        os.makedirs(args.output_dir)
 
     tokenizer = BertTokenizer.from_pretrained(args.bert_model, do_lower_case=args.do_lower_case)
 
@@ -359,7 +367,7 @@ def main():
 
     # Prepare model
     model = BertForMultipleChoice.from_pretrained(args.bert_model,
-        cache_dir=PYTORCH_PRETRAINED_BERT_CACHE / 'distributed_{}'.format(args.local_rank),
+        cache_dir=os.path.join(PYTORCH_PRETRAINED_BERT_CACHE, 'distributed_{}'.format(args.local_rank)),
         num_choices=4)
     if args.fp16:
         model.half()
@@ -461,18 +469,25 @@ def main():
                     optimizer.zero_grad()
                     global_step += 1
 
-    # Save a trained model
-    model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
-    output_model_file = os.path.join(args.output_dir, "pytorch_model.bin")
-    torch.save(model_to_save.state_dict(), output_model_file)
 
-    # Load a trained model that you have fine-tuned
-    model_state_dict = torch.load(output_model_file)
-    model = BertForMultipleChoice.from_pretrained(args.bert_model,
-        state_dict=model_state_dict,
-        num_choices=4)
+    if args.do_train:
+        # Save a trained model and the associated configuration
+        model_to_save = model.module if hasattr(model, 'module') else model  # Only save the model it-self
+        output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME)
+        torch.save(model_to_save.state_dict(), output_model_file)
+        output_config_file = os.path.join(args.output_dir, CONFIG_NAME)
+        with open(output_config_file, 'w') as f:
+            f.write(model_to_save.config.to_json_string())
+
+        # Load a trained model and config that you have fine-tuned
+        config = BertConfig(output_config_file)
+        model = BertForMultipleChoice(config, num_choices=4)
+        model.load_state_dict(torch.load(output_model_file))
+    else:
+        model = BertForMultipleChoice.from_pretrained(args.bert_model, num_choices=4)
     model.to(device)
 
+
     if args.do_eval and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
         eval_examples = read_swag_examples(os.path.join(args.data_dir, 'val.csv'), is_training = True)
         eval_features = convert_examples_to_features(

examples/run_transfo_xl.py

+# coding=utf-8
+# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HugginFace Inc. team.
+# Copyright (c) 2018, NVIDIA CORPORATION.  All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+""" PyTorch Transformer XL model evaluation script.
+    Adapted from https://github.com/kimiyoung/transformer-xl.
+    In particular https://github.com/kimiyoung/transformer-xl/blob/master/pytorch/eval.py
+
+    This script with default values evaluates a pretrained Transformer-XL on WikiText 103
+"""
+from __future__ import absolute_import, division, print_function, unicode_literals
+
+import argparse
+import logging
+import time
+import math
+
+import torch
+
+from pytorch_pretrained_bert import TransfoXLLMHeadModel, TransfoXLCorpus
+
+logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
+                    datefmt = '%m/%d/%Y %H:%M:%S',
+                    level = logging.INFO)
+logger = logging.getLogger(__name__)
+
+def main():
+    parser = argparse.ArgumentParser(description='PyTorch Transformer Language Model')
+    parser.add_argument('--model_name', type=str, default='transfo-xl-wt103',
+                        help='pretrained model name')
+    parser.add_argument('--split', type=str, default='test',
+                        choices=['all', 'valid', 'test'],
+                        help='which split to evaluate')
+    parser.add_argument('--batch_size', type=int, default=10,
+                        help='batch size')
+    parser.add_argument('--tgt_len', type=int, default=128,
+                        help='number of tokens to predict')
+    parser.add_argument('--ext_len', type=int, default=0,
+                        help='length of the extended context')
+    parser.add_argument('--mem_len', type=int, default=1600,
+                        help='length of the retained previous heads')
+    parser.add_argument('--clamp_len', type=int, default=1000,
+                        help='max positional embedding index')
+    parser.add_argument('--no_cuda', action='store_true',
+                        help='Do not use CUDA even though CUA is available')
+    parser.add_argument('--work_dir', type=str, required=True,
+                        help='path to the work_dir')
+    parser.add_argument('--no_log', action='store_true',
+                        help='do not log the eval result')
+    parser.add_argument('--same_length', action='store_true',
+                        help='set same length attention with masking')
+    parser.add_argument('--server_ip', type=str, default='', help="Can be used for distant debugging.")
+    parser.add_argument('--server_port', type=str, default='', help="Can be used for distant debugging.")
+    args = parser.parse_args()
+    assert args.ext_len >= 0, 'extended context length must be non-negative'
+
+    if args.server_ip and args.server_port:
+        # Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
+        import ptvsd
+        print("Waiting for debugger attach")
+        ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
+        ptvsd.wait_for_attach()
+
+    device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
+    logger.info("device: {}".format(device))
+
+    # Load a pre-processed dataset
+    # You can also build the corpus yourself using TransfoXLCorpus methods
+    # The pre-processing involve computing word frequencies to prepare the Adaptive input and SoftMax
+    # and tokenizing the dataset
+    # The pre-processed corpus is a convertion (using the conversion script )
+    corpus = TransfoXLCorpus.from_pretrained(args.model_name)
+    ntokens = len(corpus.vocab)
+
+    va_iter = corpus.get_iterator('valid', args.batch_size, args.tgt_len,
+        device=device, ext_len=args.ext_len)
+    te_iter = corpus.get_iterator('test', args.batch_size, args.tgt_len,
+        device=device, ext_len=args.ext_len)
+
+    # Load a pre-trained model
+    model = TransfoXLLMHeadModel.from_pretrained(args.model_name)
+    model = model.to(device)
+
+    logger.info('Evaluating with bsz {} tgt_len {} ext_len {} mem_len {} clamp_len {}'.format(
+        args.batch_size, args.tgt_len, args.ext_len, args.mem_len, args.clamp_len))
+
+    model.reset_length(args.tgt_len, args.ext_len, args.mem_len)
+    if args.clamp_len > 0:
+        model.clamp_len = args.clamp_len
+    if args.same_length:
+        model.same_length = True
+
+    ###############################################################################
+    # Evaluation code
+    ###############################################################################
+    def evaluate(eval_iter):
+        # Turn on evaluation mode which disables dropout.
+        model.eval()
+        total_len, total_loss = 0, 0.
+        start_time = time.time()
+        with torch.no_grad():
+            mems = None
+            for idx, (data, target, seq_len) in enumerate(eval_iter):
+                ret = model(data, target, mems)
+                loss, mems = ret
+                loss = loss.mean()
+                total_loss += seq_len * loss.item()
+                total_len += seq_len
+            total_time = time.time() - start_time
+        logger.info('Time : {:.2f}s, {:.2f}ms/segment'.format(
+                total_time, 1000 * total_time / (idx+1)))
+        return total_loss / total_len
+
+    # Run on test data.
+    if args.split == 'all':
+        test_loss = evaluate(te_iter)
+        valid_loss = evaluate(va_iter)
+    elif args.split == 'valid':
+        valid_loss = evaluate(va_iter)
+        test_loss = None
+    elif args.split == 'test':
+        test_loss = evaluate(te_iter)
+        valid_loss = None
+
+    def format_log(loss, split):
+        log_str = '| {0} loss {1:5.2f} | {0} ppl {2:9.3f} '.format(
+            split, loss, math.exp(loss))
+        return log_str
+
+    log_str = ''
+    if valid_loss is not None:
+        log_str += format_log(valid_loss, 'valid')
+    if test_loss is not None:
+        log_str += format_log(test_loss, 'test')
+
+    logger.info('=' * 100)
+    logger.info(log_str)
+    logger.info('=' * 100)
+
+if __name__ == '__main__':
+    main()

pytorch_pretrained_bert/__init__.py

-__version__ = "0.4.0"
+__version__ = "0.5.0"
 from .tokenization import BertTokenizer, BasicTokenizer, WordpieceTokenizer
+from .tokenization_openai import OpenAIGPTTokenizer
+from .tokenization_transfo_xl import (TransfoXLTokenizer, TransfoXLCorpus)
+
 from .modeling import (BertConfig, BertModel, BertForPreTraining,
                        BertForMaskedLM, BertForNextSentencePrediction,
                        BertForSequenceClassification, BertForMultipleChoice,
-                       BertForTokenClassification, BertForQuestionAnswering)
+                       BertForTokenClassification, BertForQuestionAnswering,
+                       load_tf_weights_in_bert)
+from .modeling_openai import (OpenAIGPTConfig, OpenAIGPTModel,
+                              OpenAIGPTLMHeadModel, OpenAIGPTDoubleHeadsModel,
+                              load_tf_weights_in_openai_gpt)
+from .modeling_transfo_xl import (TransfoXLConfig, TransfoXLModel, TransfoXLLMHeadModel,
+                                  load_tf_weights_in_transfo_xl)
+
 from .optimization import BertAdam
-from .file_utils import PYTORCH_PRETRAINED_BERT_CACHE
+from .optimization_openai import OpenAIAdam
+
+from .file_utils import PYTORCH_PRETRAINED_BERT_CACHE, cached_path

pytorch_pretrained_bert/__main__.py

 # coding: utf8
 def main():
     import sys
-    try:
-        from .convert_tf_checkpoint_to_pytorch import convert_tf_checkpoint_to_pytorch
-    except ModuleNotFoundError:
-        print("pytorch_pretrained_bert can only be used from the commandline to convert TensorFlow models in PyTorch, "
-              "In that case, it requires TensorFlow to be installed. Please see "
-              "https://www.tensorflow.org/install/ for installation instructions.")
-        raise
-
-    if len(sys.argv) != 5:
-        # pylint: disable=line-too-long
-        print("Should be used as `pytorch_pretrained_bert convert_tf_checkpoint_to_pytorch TF_CHECKPOINT TF_CONFIG PYTORCH_DUMP_OUTPUT`")
+    if (len(sys.argv) != 4 and len(sys.argv) != 5) or sys.argv[1] not in [
+        "convert_tf_checkpoint_to_pytorch",
+        "convert_openai_checkpoint",
+        "convert_transfo_xl_checkpoint"
+    ]:
+        print(
+        "Should be used as one of: \n"
+        ">> `pytorch_pretrained_bert convert_tf_checkpoint_to_pytorch TF_CHECKPOINT TF_CONFIG PYTORCH_DUMP_OUTPUT`, \n"
+        ">> `pytorch_pretrained_bert convert_openai_checkpoint OPENAI_GPT_CHECKPOINT_FOLDER_PATH PYTORCH_DUMP_OUTPUT [OPENAI_GPT_CONFIG]` or \n"
+        ">> `pytorch_pretrained_bert convert_transfo_xl_checkpoint TF_CHECKPOINT_OR_DATASET PYTORCH_DUMP_OUTPUT [TF_CONFIG]`")
     else:
-        PYTORCH_DUMP_OUTPUT = sys.argv.pop()
-        TF_CONFIG = sys.argv.pop()
-        TF_CHECKPOINT = sys.argv.pop()
-        convert_tf_checkpoint_to_pytorch(TF_CHECKPOINT, TF_CONFIG, PYTORCH_DUMP_OUTPUT)
+        if sys.argv[1] == "convert_tf_checkpoint_to_pytorch":
+            try:
+                from .convert_tf_checkpoint_to_pytorch import convert_tf_checkpoint_to_pytorch
+            except ImportError:
+                print("pytorch_pretrained_bert can only be used from the commandline to convert TensorFlow models in PyTorch, "
+                    "In that case, it requires TensorFlow to be installed. Please see "
+                    "https://www.tensorflow.org/install/ for installation instructions.")
+                raise
+
+            if len(sys.argv) != 5:
+                # pylint: disable=line-too-long
+                print("Should be used as `pytorch_pretrained_bert convert_tf_checkpoint_to_pytorch TF_CHECKPOINT TF_CONFIG PYTORCH_DUMP_OUTPUT`")
+            else:
+                PYTORCH_DUMP_OUTPUT = sys.argv.pop()
+                TF_CONFIG = sys.argv.pop()
+                TF_CHECKPOINT = sys.argv.pop()
+                convert_tf_checkpoint_to_pytorch(TF_CHECKPOINT, TF_CONFIG, PYTORCH_DUMP_OUTPUT)
+        elif sys.argv[1] == "convert_openai_checkpoint":
+            from .convert_openai_checkpoint_to_pytorch import convert_openai_checkpoint_to_pytorch
+            OPENAI_GPT_CHECKPOINT_FOLDER_PATH = sys.argv[2]
+            PYTORCH_DUMP_OUTPUT = sys.argv[3]
+            if len(sys.argv) == 5:
+                OPENAI_GPT_CONFIG = sys.argv[4]
+            else:
+                OPENAI_GPT_CONFIG = ""
+            convert_openai_checkpoint_to_pytorch(OPENAI_GPT_CHECKPOINT_FOLDER_PATH,
+                                                 OPENAI_GPT_CONFIG,
+                                                 PYTORCH_DUMP_OUTPUT)
+        else:
+            try:
+                from .convert_transfo_xl_checkpoint_to_pytorch import convert_transfo_xl_checkpoint_to_pytorch
+            except ImportError:
+                print("pytorch_pretrained_bert can only be used from the commandline to convert TensorFlow models in PyTorch, "
+                    "In that case, it requires TensorFlow to be installed. Please see "
+                    "https://www.tensorflow.org/install/ for installation instructions.")
+                raise
 
+            if 'ckpt' in sys.argv[2].lower():
+                TF_CHECKPOINT = sys.argv[2]
+                TF_DATASET_FILE = ""
+            else:
+                TF_DATASET_FILE = sys.argv[2]
+                TF_CHECKPOINT = ""
+            PYTORCH_DUMP_OUTPUT = sys.argv[3]
+            if len(sys.argv) == 5:
+                TF_CONFIG = sys.argv[4]
+            else:
+                TF_CONFIG = ""
+            convert_transfo_xl_checkpoint_to_pytorch(TF_CHECKPOINT, TF_CONFIG, PYTORCH_DUMP_OUTPUT, TF_DATASET_FILE)
 if __name__ == '__main__':
     main()

pytorch_pretrained_bert/convert_openai_checkpoint_to_pytorch.py

+# coding=utf-8
+# Copyright 2018 The HugginFace Inc. team.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Convert OpenAI GPT checkpoint."""
+
+from __future__ import absolute_import, division, print_function
+
+import argparse
+from io import open
+
+import torch
+
+from pytorch_pretrained_bert.modeling_openai import (CONFIG_NAME, WEIGHTS_NAME,
+                                                     OpenAIGPTConfig,
+                                                     OpenAIGPTModel,
+                                                     load_tf_weights_in_openai_gpt)
+
+
+def convert_openai_checkpoint_to_pytorch(openai_checkpoint_folder_path, openai_config_file, pytorch_dump_folder_path):
+    # Construct model
+    if openai_config_file == "":
+        config = OpenAIGPTConfig()
+    else:
+        config = OpenAIGPTConfig(openai_config_file)
+    model = OpenAIGPTModel(config)
+
+    # Load weights from numpy
+    load_tf_weights_in_openai_gpt(model, openai_checkpoint_folder_path)
+
+    # Save pytorch-model
+    pytorch_weights_dump_path = pytorch_dump_folder_path + '/' + WEIGHTS_NAME
+    pytorch_config_dump_path = pytorch_dump_folder_path + '/' + CONFIG_NAME
+    print("Save PyTorch model to {}".format(pytorch_weights_dump_path))
+    torch.save(model.state_dict(), pytorch_weights_dump_path)
+    print("Save configuration file to {}".format(pytorch_config_dump_path))
+    with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
+        f.write(config.to_json_string())
+
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+    ## Required parameters
+    parser.add_argument("--openai_checkpoint_folder_path",
+                        default = None,
+                        type = str,
+                        required = True,
+                        help = "Path the TensorFlow checkpoint path.")
+    parser.add_argument("--pytorch_dump_folder_path",
+                        default = None,
+                        type = str,
+                        required = True,
+                        help = "Path to the output PyTorch model.")
+    parser.add_argument("--openai_config_file",
+                        default = "",
+                        type = str,
+                        help = "An optional config json file corresponding to the pre-trained OpenAI model. \n"
+                            "This specifies the model architecture.")
+    args = parser.parse_args()
+    convert_openai_checkpoint_to_pytorch(args.openai_checkpoint_folder_path,
+                                         args.openai_config_file,
+                                         args.pytorch_dump_folder_path)

pytorch_pretrained_bert/convert_tf_checkpoint_to_pytorch.py

@@ -25,62 +25,16 @@ import tensorflow as tf
 import torch
 import numpy as np
 
-from .modeling import BertConfig, BertForPreTraining
+from pytorch_pretrained_bert.modeling import BertConfig, BertForPreTraining, load_tf_weights_in_bert
 
 def convert_tf_checkpoint_to_pytorch(tf_checkpoint_path, bert_config_file, pytorch_dump_path):
-    config_path = os.path.abspath(bert_config_file)
-    tf_path = os.path.abspath(tf_checkpoint_path)
-    print("Converting TensorFlow checkpoint from {} with config at {}".format(tf_path, config_path))
-    # Load weights from TF model
-    init_vars = tf.train.list_variables(tf_path)
-    names = []
-    arrays = []
-    for name, shape in init_vars:
-        print("Loading TF weight {} with shape {}".format(name, shape))
-        array = tf.train.load_variable(tf_path, name)
-        names.append(name)
-        arrays.append(array)
-
     # Initialise PyTorch model
     config = BertConfig.from_json_file(bert_config_file)
     print("Building PyTorch model from configuration: {}".format(str(config)))
     model = BertForPreTraining(config)
 
-    for name, array in zip(names, arrays):
-        name = name.split('/')
-        # adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
-        # which are not required for using pretrained model
-        if any(n in ["adam_v", "adam_m", "global_step"] for n in name):
-            print("Skipping {}".format("/".join(name)))
-            continue
-        pointer = model
-        for m_name in name:
-            if re.fullmatch(r'[A-Za-z]+_\d+', m_name):
-                l = re.split(r'_(\d+)', m_name)
-            else:
-                l = [m_name]
-            if l[0] == 'kernel' or l[0] == 'gamma':
-                pointer = getattr(pointer, 'weight')
-            elif l[0] == 'output_bias' or l[0] == 'beta':
-                pointer = getattr(pointer, 'bias')
-            elif l[0] == 'output_weights':
-                pointer = getattr(pointer, 'weight')
-            else:
-                pointer = getattr(pointer, l[0])
-            if len(l) >= 2:
-                num = int(l[1])
-                pointer = pointer[num]
-        if m_name[-11:] == '_embeddings':
-            pointer = getattr(pointer, 'weight')
-        elif m_name == 'kernel':
-            array = np.transpose(array)
-        try:
-            assert pointer.shape == array.shape
-        except AssertionError as e:
-            e.args += (pointer.shape, array.shape)
-            raise
-        print("Initialize PyTorch weight {}".format(name))
-        pointer.data = torch.from_numpy(array)
+    # Load weights from tf checkpoint
+    load_tf_weights_in_bert(model, tf_checkpoint_path)
 
     # Save pytorch-model
     print("Save PyTorch model to {}".format(pytorch_dump_path))

pytorch_pretrained_bert/convert_transfo_xl_checkpoint_to_pytorch.py

+# coding=utf-8
+# Copyright 2018 The HugginFace Inc. team.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Convert Transformer XL checkpoint and datasets."""
+
+from __future__ import absolute_import, division, print_function
+
+import argparse
+import os
+import sys
+from io import open
+
+import torch
+
+import pytorch_pretrained_bert.tokenization_transfo_xl as data_utils
+from pytorch_pretrained_bert.modeling_transfo_xl import (CONFIG_NAME,
+                                                         WEIGHTS_NAME,
+                                                         TransfoXLConfig,
+                                                         TransfoXLLMHeadModel,
+                                                         load_tf_weights_in_transfo_xl)
+from pytorch_pretrained_bert.tokenization_transfo_xl import (CORPUS_NAME,
+                                                             VOCAB_NAME)
+
+if sys.version_info[0] == 2:
+    import cPickle as pickle
+else:
+    import pickle
+
+# We do this to be able to load python 2 datasets pickles
+# See e.g. https://stackoverflow.com/questions/2121874/python-pickling-after-changing-a-modules-directory/2121918#2121918
+data_utils.Vocab = data_utils.TransfoXLTokenizer
+data_utils.Corpus = data_utils.TransfoXLCorpus
+sys.modules['data_utils'] = data_utils
+sys.modules['vocabulary'] = data_utils
+
+def convert_transfo_xl_checkpoint_to_pytorch(tf_checkpoint_path,
+                                             transfo_xl_config_file,
+                                             pytorch_dump_folder_path,
+                                             transfo_xl_dataset_file):
+    if transfo_xl_dataset_file:
+        # Convert a pre-processed corpus (see original TensorFlow repo)
+        with open(transfo_xl_dataset_file, "rb") as fp:
+            corpus = pickle.load(fp, encoding="latin1")
+        # Save vocabulary and dataset cache as Dictionaries (should be better than pickles for the long-term)
+        pytorch_vocab_dump_path = pytorch_dump_folder_path + '/' + VOCAB_NAME
+        print("Save vocabulary to {}".format(pytorch_vocab_dump_path))
+        corpus_vocab_dict = corpus.vocab.__dict__
+        torch.save(corpus_vocab_dict, pytorch_vocab_dump_path)
+
+        corpus_dict_no_vocab = corpus.__dict__
+        corpus_dict_no_vocab.pop('vocab', None)
+        pytorch_dataset_dump_path = pytorch_dump_folder_path + '/' + CORPUS_NAME
+        print("Save dataset to {}".format(pytorch_dataset_dump_path))
+        torch.save(corpus_dict_no_vocab, pytorch_dataset_dump_path)
+
+    if tf_checkpoint_path:
+        # Convert a pre-trained TensorFlow model
+        config_path = os.path.abspath(transfo_xl_config_file)
+        tf_path = os.path.abspath(tf_checkpoint_path)
+
+        print("Converting Transformer XL checkpoint from {} with config at {}".format(tf_path, config_path))
+        # Initialise PyTorch model
+        if transfo_xl_config_file == "":
+            config = TransfoXLConfig()
+        else:
+            config = TransfoXLConfig(transfo_xl_config_file)
+        print("Building PyTorch model from configuration: {}".format(str(config)))
+        model = TransfoXLLMHeadModel(config)
+
+        model = load_tf_weights_in_transfo_xl(model, config, tf_path)
+        # Save pytorch-model
+        pytorch_weights_dump_path = os.path.join(pytorch_dump_folder_path, WEIGHTS_NAME)
+        pytorch_config_dump_path = os.path.join(pytorch_dump_folder_path, CONFIG_NAME)
+        print("Save PyTorch model to {}".format(os.path.abspath(pytorch_weights_dump_path)))
+        torch.save(model.state_dict(), pytorch_weights_dump_path)
+        print("Save configuration file to {}".format(os.path.abspath(pytorch_config_dump_path)))
+        with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
+            f.write(config.to_json_string())
+
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--pytorch_dump_folder_path",
+                        default = None,
+                        type = str,
+                        required = True,
+                        help = "Path to the folder to store the PyTorch model or dataset/vocab.")
+    parser.add_argument("--tf_checkpoint_path",
+                        default = "",
+                        type = str,
+                        help = "An optional path to a TensorFlow checkpoint path to be converted.")
+    parser.add_argument("--transfo_xl_config_file",
+                        default = "",
+                        type = str,
+                        help = "An optional config json file corresponding to the pre-trained BERT model. \n"
+                            "This specifies the model architecture.")
+    parser.add_argument("--transfo_xl_dataset_file",
+                        default = "",
+                        type = str,
+                        help = "An optional dataset file to be converted in a vocabulary.")
+    args = parser.parse_args()
+    convert_transfo_xl_checkpoint_to_pytorch(args.tf_checkpoint_path,
+                                     args.transfo_xl_config_file,
+                                     args.pytorch_dump_folder_path,
+                                     args.transfo_xl_dataset_file)

pytorch_pretrained_bert/file_utils.py

@@ -3,31 +3,40 @@ Utilities for working with the local dataset cache.
 This file is adapted from the AllenNLP library at https://github.com/allenai/allennlp
 Copyright by the AllenNLP authors.
 """
+from __future__ import (absolute_import, division, print_function, unicode_literals)
 
-import os
+import json
 import logging
+import os
 import shutil
 import tempfile
-import json
-from urllib.parse import urlparse
-from pathlib import Path
-from typing import Optional, Tuple, Union, IO, Callable, Set
-from hashlib import sha256
 from functools import wraps
-
-from tqdm import tqdm
+from hashlib import sha256
+import sys
+from io import open
 
 import boto3
-from botocore.exceptions import ClientError
 import requests
+from botocore.exceptions import ClientError
+from tqdm import tqdm
 
-logger = logging.getLogger(__name__)  # pylint: disable=invalid-name
+try:
+    from urllib.parse import urlparse
+except ImportError:
+    from urlparse import urlparse
+
+try:
+    from pathlib import Path
+    PYTORCH_PRETRAINED_BERT_CACHE = Path(os.getenv('PYTORCH_PRETRAINED_BERT_CACHE',
+                                                   Path.home() / '.pytorch_pretrained_bert'))
+except AttributeError:
+    PYTORCH_PRETRAINED_BERT_CACHE = os.getenv('PYTORCH_PRETRAINED_BERT_CACHE',
+                                              os.path.join(os.path.expanduser("~"), '.pytorch_pretrained_bert'))
 
-PYTORCH_PRETRAINED_BERT_CACHE = Path(os.getenv('PYTORCH_PRETRAINED_BERT_CACHE',
-                                               Path.home() / '.pytorch_pretrained_bert'))
+logger = logging.getLogger(__name__)  # pylint: disable=invalid-name
 
 
-def url_to_filename(url: str, etag: str = None) -> str:
+def url_to_filename(url, etag=None):
     """
     Convert `url` into a hashed filename in a repeatable way.
     If `etag` is specified, append its hash to the url's, delimited
@@ -45,25 +54,25 @@ def url_to_filename(url: str, etag: str = None) -> str:
     return filename
 
 
-def filename_to_url(filename: str, cache_dir: Union[str, Path] = None) -> Tuple[str, str]:
+def filename_to_url(filename, cache_dir=None):
     """
     Return the url and etag (which may be ``None``) stored for `filename`.
-    Raise ``FileNotFoundError`` if `filename` or its stored metadata do not exist.
+    Raise ``EnvironmentError`` if `filename` or its stored metadata do not exist.
     """
     if cache_dir is None:
         cache_dir = PYTORCH_PRETRAINED_BERT_CACHE
-    if isinstance(cache_dir, Path):
+    if sys.version_info[0] == 3 and isinstance(cache_dir, Path):
         cache_dir = str(cache_dir)
 
     cache_path = os.path.join(cache_dir, filename)
     if not os.path.exists(cache_path):
-        raise FileNotFoundError("file {} not found".format(cache_path))
+        raise EnvironmentError("file {} not found".format(cache_path))
 
     meta_path = cache_path + '.json'
     if not os.path.exists(meta_path):
-        raise FileNotFoundError("file {} not found".format(meta_path))
+        raise EnvironmentError("file {} not found".format(meta_path))
 
-    with open(meta_path) as meta_file:
+    with open(meta_path, encoding="utf-8") as meta_file:
         metadata = json.load(meta_file)
     url = metadata['url']
     etag = metadata['etag']
@@ -71,7 +80,7 @@ def filename_to_url(filename: str, cache_dir: Union[str, Path] = None) -> Tuple[
     return url, etag
 
 
-def cached_path(url_or_filename: Union[str, Path], cache_dir: Union[str, Path] = None) -> str:
+def cached_path(url_or_filename, cache_dir=None):
     """
     Given something that might be a URL (or might be a local path),
     determine which. If it's a URL, download the file and cache it, and
@@ -80,9 +89,9 @@ def cached_path(url_or_filename: Union[str, Path], cache_dir: Union[str, Path] =
     """
     if cache_dir is None:
         cache_dir = PYTORCH_PRETRAINED_BERT_CACHE
-    if isinstance(url_or_filename, Path):
+    if sys.version_info[0] == 3 and isinstance(url_or_filename, Path):
         url_or_filename = str(url_or_filename)
-    if isinstance(cache_dir, Path):
+    if sys.version_info[0] == 3 and isinstance(cache_dir, Path):
         cache_dir = str(cache_dir)
 
     parsed = urlparse(url_or_filename)
@@ -95,13 +104,13 @@ def cached_path(url_or_filename: Union[str, Path], cache_dir: Union[str, Path] =
         return url_or_filename
     elif parsed.scheme == '':
         # File, but it doesn't exist.
-        raise FileNotFoundError("file {} not found".format(url_or_filename))
+        raise EnvironmentError("file {} not found".format(url_or_filename))
     else:
         # Something unknown
         raise ValueError("unable to parse {} as a URL or as a local path".format(url_or_filename))
 
 
-def split_s3_path(url: str) -> Tuple[str, str]:
+def split_s3_path(url):
     """Split a full s3 path into the bucket name and path."""
     parsed = urlparse(url)
     if not parsed.netloc or not parsed.path:
@@ -114,19 +123,19 @@ def split_s3_path(url: str) -> Tuple[str, str]:
     return bucket_name, s3_path
 
 
-def s3_request(func: Callable):
+def s3_request(func):
     """
     Wrapper function for s3 requests in order to create more helpful error
     messages.
     """
 
     @wraps(func)
-    def wrapper(url: str, *args, **kwargs):
+    def wrapper(url, *args, **kwargs):
         try:
             return func(url, *args, **kwargs)
         except ClientError as exc:
             if int(exc.response["Error"]["Code"]) == 404:
-                raise FileNotFoundError("file {} not found".format(url))
+                raise EnvironmentError("file {} not found".format(url))
             else:
                 raise
 
@@ -134,7 +143,7 @@ def s3_request(func: Callable):
 
 
 @s3_request
-def s3_etag(url: str) -> Optional[str]:
+def s3_etag(url):
     """Check ETag on S3 object."""
     s3_resource = boto3.resource("s3")
     bucket_name, s3_path = split_s3_path(url)
@@ -143,14 +152,14 @@ def s3_etag(url: str) -> Optional[str]:
 
 
 @s3_request
-def s3_get(url: str, temp_file: IO) -> None:
+def s3_get(url, temp_file):
     """Pull a file directly from S3."""
     s3_resource = boto3.resource("s3")
     bucket_name, s3_path = split_s3_path(url)
     s3_resource.Bucket(bucket_name).download_fileobj(s3_path, temp_file)
 
 
-def http_get(url: str, temp_file: IO) -> None:
+def http_get(url, temp_file):
     req = requests.get(url, stream=True)
     content_length = req.headers.get('Content-Length')
     total = int(content_length) if content_length is not None else None
@@ -162,17 +171,18 @@ def http_get(url: str, temp_file: IO) -> None:
     progress.close()
 
 
-def get_from_cache(url: str, cache_dir: Union[str, Path] = None) -> str:
+def get_from_cache(url, cache_dir=None):
     """
     Given a URL, look for the corresponding dataset in the local cache.
     If it's not there, download it. Then return the path to the cached file.
     """
     if cache_dir is None:
         cache_dir = PYTORCH_PRETRAINED_BERT_CACHE
-    if isinstance(cache_dir, Path):
+    if sys.version_info[0] == 3 and isinstance(cache_dir, Path):
         cache_dir = str(cache_dir)
 
-    os.makedirs(cache_dir, exist_ok=True)
+    if not os.path.exists(cache_dir):
+        os.makedirs(cache_dir)
 
     # Get eTag to add to filename, if it exists.
     if url.startswith("s3://"):
@@ -213,7 +223,7 @@ def get_from_cache(url: str, cache_dir: Union[str, Path] = None) -> str:
             logger.info("creating metadata file for %s", cache_path)
             meta = {'url': url, 'etag': etag}
             meta_path = cache_path + '.json'
-            with open(meta_path, 'w') as meta_file:
+            with open(meta_path, 'w', encoding="utf-8") as meta_file:
                 json.dump(meta, meta_file)
 
             logger.info("removing temp file %s", temp_file.name)
@@ -221,7 +231,7 @@ def get_from_cache(url: str, cache_dir: Union[str, Path] = None) -> str:
     return cache_path
 
 
-def read_set_from_file(filename: str) -> Set[str]:
+def read_set_from_file(filename):
     '''
     Extract a de-duped collection (set) of text from a file.
     Expected file format is one item per line.
@@ -233,7 +243,7 @@ def read_set_from_file(filename: str) -> Set[str]:
     return collection
 
 
-def get_file_extension(path: str, dot=True, lower: bool = True):
+def get_file_extension(path, dot=True, lower=True):
     ext = os.path.splitext(path)[1]
     ext = ext if dot else ext[1:]
     return ext.lower() if lower else ext

pytorch_pretrained_bert/modeling.py

@@ -15,18 +15,18 @@
 # limitations under the License.
 """PyTorch BERT model."""
 
-from __future__ import absolute_import
-from __future__ import division
-from __future__ import print_function
+from __future__ import absolute_import, division, print_function, unicode_literals
 
-import os
 import copy
 import json
-import math
 import logging
+import math
+import os
+import shutil
 import tarfile
 import tempfile
-import shutil
+import sys
+from io import open
 
 import torch
 from torch import nn
@@ -47,6 +47,68 @@ PRETRAINED_MODEL_ARCHIVE_MAP = {
 }
 CONFIG_NAME = 'bert_config.json'
 WEIGHTS_NAME = 'pytorch_model.bin'
+TF_WEIGHTS_NAME = 'model.ckpt'
+
+def load_tf_weights_in_bert(model, tf_checkpoint_path):
+    """ Load tf checkpoints in a pytorch model
+    """
+    try:
+        import re
+        import numpy as np
+        import tensorflow as tf
+    except ImportError:
+        print("Loading a TensorFlow models in PyTorch, requires TensorFlow to be installed. Please see "
+            "https://www.tensorflow.org/install/ for installation instructions.")
+        raise
+    tf_path = os.path.abspath(tf_checkpoint_path)
+    print("Converting TensorFlow checkpoint from {}".format(tf_path))
+    # Load weights from TF model
+    init_vars = tf.train.list_variables(tf_path)
+    names = []
+    arrays = []
+    for name, shape in init_vars:
+        print("Loading TF weight {} with shape {}".format(name, shape))
+        array = tf.train.load_variable(tf_path, name)
+        names.append(name)
+        arrays.append(array)
+
+    for name, array in zip(names, arrays):
+        name = name.split('/')
+        # adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
+        # which are not required for using pretrained model
+        if any(n in ["adam_v", "adam_m"] for n in name):
+            print("Skipping {}".format("/".join(name)))
+            continue
+        pointer = model
+        for m_name in name:
+            if re.fullmatch(r'[A-Za-z]+_\d+', m_name):
+                l = re.split(r'_(\d+)', m_name)
+            else:
+                l = [m_name]
+            if l[0] == 'kernel' or l[0] == 'gamma':
+                pointer = getattr(pointer, 'weight')
+            elif l[0] == 'output_bias' or l[0] == 'beta':
+                pointer = getattr(pointer, 'bias')
+            elif l[0] == 'output_weights':
+                pointer = getattr(pointer, 'weight')
+            else:
+                pointer = getattr(pointer, l[0])
+            if len(l) >= 2:
+                num = int(l[1])
+                pointer = pointer[num]
+        if m_name[-11:] == '_embeddings':
+            pointer = getattr(pointer, 'weight')
+        elif m_name == 'kernel':
+            array = np.transpose(array)
+        try:
+            assert pointer.shape == array.shape
+        except AssertionError as e:
+            e.args += (pointer.shape, array.shape)
+            raise
+        print("Initialize PyTorch weight {}".format(name))
+        pointer.data = torch.from_numpy(array)
+    return model
+
 
 def gelu(x):
     """Implementation of the gelu activation function.
@@ -102,7 +164,8 @@ class BertConfig(object):
             initializer_range: The sttdev of the truncated_normal_initializer for
                 initializing all weight matrices.
         """
-        if isinstance(vocab_size_or_config_json_file, str):
+        if isinstance(vocab_size_or_config_json_file, str) or (sys.version_info[0] == 2
+                        and isinstance(vocab_size_or_config_json_file, unicode)):
             with open(vocab_size_or_config_json_file, "r", encoding='utf-8') as reader:
                 json_config = json.loads(reader.read())
             for key, value in json_config.items():
@@ -281,8 +344,10 @@ class BertIntermediate(nn.Module):
     def __init__(self, config):
         super(BertIntermediate, self).__init__()
         self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
-        self.intermediate_act_fn = ACT2FN[config.hidden_act] \
-            if isinstance(config.hidden_act, str) else config.hidden_act
+        if isinstance(config.hidden_act, str) or (sys.version_info[0] == 2 and isinstance(config.hidden_act, unicode)):
+            self.intermediate_act_fn = ACT2FN[config.hidden_act]
+        else:
+            self.intermediate_act_fn = config.hidden_act
 
     def forward(self, hidden_states):
         hidden_states = self.dense(hidden_states)
@@ -354,8 +419,10 @@ class BertPredictionHeadTransform(nn.Module):
     def __init__(self, config):
         super(BertPredictionHeadTransform, self).__init__()
         self.dense = nn.Linear(config.hidden_size, config.hidden_size)
-        self.transform_act_fn = ACT2FN[config.hidden_act] \
-            if isinstance(config.hidden_act, str) else config.hidden_act
+        if isinstance(config.hidden_act, str) or (sys.version_info[0] == 2 and isinstance(config.hidden_act, unicode)):
+            self.transform_act_fn = ACT2FN[config.hidden_act]
+        else:
+            self.transform_act_fn = config.hidden_act
         self.LayerNorm = BertLayerNorm(config.hidden_size, eps=1e-12)
 
     def forward(self, hidden_states):
@@ -416,12 +483,12 @@ class BertPreTrainingHeads(nn.Module):
         return prediction_scores, seq_relationship_score
 
 
-class PreTrainedBertModel(nn.Module):
+class BertPreTrainedModel(nn.Module):
     """ An abstract class to handle weights initialization and
         a simple interface for dowloading and loading pretrained models.
     """
     def __init__(self, config, *inputs, **kwargs):
-        super(PreTrainedBertModel, self).__init__()
+        super(BertPreTrainedModel, self).__init__()
         if not isinstance(config, BertConfig):
             raise ValueError(
                 "Parameter config in `{}(config)` should be an instance of class `BertConfig`. "
@@ -445,13 +512,14 @@ class PreTrainedBertModel(nn.Module):
             module.bias.data.zero_()
 
     @classmethod
-    def from_pretrained(cls, pretrained_model_name, state_dict=None, cache_dir=None, *inputs, **kwargs):
+    def from_pretrained(cls, pretrained_model_name_or_path, state_dict=None, cache_dir=None,
+                        from_tf=False, *inputs, **kwargs):
         """
-        Instantiate a PreTrainedBertModel from a pre-trained model file or a pytorch state dict.
+        Instantiate a BertPreTrainedModel from a pre-trained model file or a pytorch state dict.
         Download and cache the pre-trained model file if needed.
 
         Params:
-            pretrained_model_name: either:
+            pretrained_model_name_or_path: either:
                 - a str with the name of a pre-trained model to load selected in the list of:
                     . `bert-base-uncased`
                     . `bert-large-uncased`
@@ -463,24 +531,28 @@ class PreTrainedBertModel(nn.Module):
                 - a path or url to a pretrained model archive containing:
                     . `bert_config.json` a configuration file for the model
                     . `pytorch_model.bin` a PyTorch dump of a BertForPreTraining instance
+                - a path or url to a pretrained model archive containing:
+                    . `bert_config.json` a configuration file for the model
+                    . `model.chkpt` a TensorFlow checkpoint
+            from_tf: should we load the weights from a locally saved TensorFlow checkpoint
             cache_dir: an optional path to a folder in which the pre-trained models will be cached.
             state_dict: an optional state dictionnary (collections.OrderedDict object) to use instead of Google pre-trained models
             *inputs, **kwargs: additional input for the specific Bert class
                 (ex: num_labels for BertForSequenceClassification)
         """
-        if pretrained_model_name in PRETRAINED_MODEL_ARCHIVE_MAP:
-            archive_file = PRETRAINED_MODEL_ARCHIVE_MAP[pretrained_model_name]
+        if pretrained_model_name_or_path in PRETRAINED_MODEL_ARCHIVE_MAP:
+            archive_file = PRETRAINED_MODEL_ARCHIVE_MAP[pretrained_model_name_or_path]
         else:
-            archive_file = pretrained_model_name
+            archive_file = pretrained_model_name_or_path
         # redirect to the cache, if necessary
         try:
             resolved_archive_file = cached_path(archive_file, cache_dir=cache_dir)
-        except FileNotFoundError:
+        except EnvironmentError:
             logger.error(
                 "Model name '{}' was not found in model name list ({}). "
                 "We assumed '{}' was a path or url but couldn't find any file "
                 "associated to this path or url.".format(
-                    pretrained_model_name,
+                    pretrained_model_name_or_path,
                     ', '.join(PRETRAINED_MODEL_ARCHIVE_MAP.keys()),
                     archive_file))
             return None
@@ -490,7 +562,7 @@ class PreTrainedBertModel(nn.Module):
             logger.info("loading archive file {} from cache at {}".format(
                 archive_file, resolved_archive_file))
         tempdir = None
-        if os.path.isdir(resolved_archive_file):
+        if os.path.isdir(resolved_archive_file) or from_tf:
             serialization_dir = resolved_archive_file
         else:
             # Extract archive to temp dir
@@ -506,10 +578,17 @@ class PreTrainedBertModel(nn.Module):
         logger.info("Model config {}".format(config))
         # Instantiate model.
         model = cls(config, *inputs, **kwargs)
-        if state_dict is None:
+        if state_dict is None and not from_tf:
             weights_path = os.path.join(serialization_dir, WEIGHTS_NAME)
-            state_dict = torch.load(weights_path)
-
+            state_dict = torch.load(weights_path, map_location='cpu' if not torch.cuda.is_available() else None)
+        if tempdir:
+            # Clean up temp dir
+            shutil.rmtree(tempdir)
+        if from_tf:
+            # Directly load from a TensorFlow checkpoint
+            weights_path = os.path.join(serialization_dir, TF_WEIGHTS_NAME)
+            return load_tf_weights_in_bert(model, weights_path)
+        # Load from a PyTorch state_dict
         old_keys = []
         new_keys = []
         for key in state_dict.keys():
@@ -540,20 +619,23 @@ class PreTrainedBertModel(nn.Module):
             for name, child in module._modules.items():
                 if child is not None:
                     load(child, prefix + name + '.')
-        load(model, prefix='' if hasattr(model, 'bert') else 'bert.')
+        start_prefix = ''
+        if not hasattr(model, 'bert') and any(s.startswith('bert.') for s in state_dict.keys()):
+            start_prefix = 'bert.'
+        load(model, prefix=start_prefix)
         if len(missing_keys) > 0:
             logger.info("Weights of {} not initialized from pretrained model: {}".format(
                 model.__class__.__name__, missing_keys))
         if len(unexpected_keys) > 0:
             logger.info("Weights from pretrained model not used in {}: {}".format(
                 model.__class__.__name__, unexpected_keys))
-        if tempdir:
-            # Clean up temp dir
-            shutil.rmtree(tempdir)
+        if len(error_msgs) > 0:
+            raise RuntimeError('Error(s) in loading state_dict for {}:\n\t{}'.format(
+                               model.__class__.__name__, "\n\t".join(error_msgs)))
         return model
 
 
-class BertModel(PreTrainedBertModel):
+class BertModel(BertPreTrainedModel):
     """BERT model ("Bidirectional Embedding Representations from a Transformer").
 
     Params:
@@ -581,7 +663,7 @@ class BertModel(PreTrainedBertModel):
                 to the last attention block of shape [batch_size, sequence_length, hidden_size],
         `pooled_output`: a torch.FloatTensor of size [batch_size, hidden_size] which is the output of a
             classifier pretrained on top of the hidden state associated to the first character of the
-            input (`CLF`) to train on the Next-Sentence task (see BERT's paper).
+            input (`CLS`) to train on the Next-Sentence task (see BERT's paper).
 
     Example usage:
     ```python
@@ -636,7 +718,7 @@ class BertModel(PreTrainedBertModel):
         return encoded_layers, pooled_output
 
 
-class BertForPreTraining(PreTrainedBertModel):
+class BertForPreTraining(BertPreTrainedModel):
     """BERT model with pre-training heads.
     This module comprises the BERT model followed by the two pre-training heads:
         - the masked language modeling head, and
@@ -656,10 +738,10 @@ class BertForPreTraining(PreTrainedBertModel):
             selected in [0, 1]. It's a mask to be used if the input sequence length is smaller than the max
             input sequence length in the current batch. It's the mask that we typically use for attention when
             a batch has varying length sentences.
-        `masked_lm_labels`: masked language modeling labels: torch.LongTensor of shape [batch_size, sequence_length]
+        `masked_lm_labels`: optional masked language modeling labels: torch.LongTensor of shape [batch_size, sequence_length]
             with indices selected in [-1, 0, ..., vocab_size]. All labels set to -1 are ignored (masked), the loss
             is only computed for the labels set in [0, ..., vocab_size]
-        `next_sentence_label`: next sentence classification loss: torch.LongTensor of shape [batch_size]
+        `next_sentence_label`: optional next sentence classification loss: torch.LongTensor of shape [batch_size]
             with indices selected in [0, 1].
             0 => next sentence is the continuation, 1 => next sentence is a random sentence.
 
@@ -707,7 +789,7 @@ class BertForPreTraining(PreTrainedBertModel):
             return prediction_scores, seq_relationship_score
 
 
-class BertForMaskedLM(PreTrainedBertModel):
+class BertForMaskedLM(BertPreTrainedModel):
     """BERT model with the masked language modeling head.
     This module comprises the BERT model followed by the masked language modeling head.
 
@@ -768,7 +850,7 @@ class BertForMaskedLM(PreTrainedBertModel):
             return prediction_scores
 
 
-class BertForNextSentencePrediction(PreTrainedBertModel):
+class BertForNextSentencePrediction(BertPreTrainedModel):
     """BERT model with next sentence prediction head.
     This module comprises the BERT model followed by the next sentence classification head.
 
@@ -830,7 +912,7 @@ class BertForNextSentencePrediction(PreTrainedBertModel):
             return seq_relationship_score
 
 
-class BertForSequenceClassification(PreTrainedBertModel):
+class BertForSequenceClassification(BertPreTrainedModel):
     """BERT model for classification.
     This module is composed of the BERT model with a linear layer on top of
     the pooled output.
@@ -875,7 +957,7 @@ class BertForSequenceClassification(PreTrainedBertModel):
     logits = model(input_ids, token_type_ids, input_mask)
     ```
     """
-    def __init__(self, config, num_labels=2):
+    def __init__(self, config, num_labels):
         super(BertForSequenceClassification, self).__init__(config)
         self.num_labels = num_labels
         self.bert = BertModel(config)
@@ -896,7 +978,7 @@ class BertForSequenceClassification(PreTrainedBertModel):
             return logits
 
 
-class BertForMultipleChoice(PreTrainedBertModel):
+class BertForMultipleChoice(BertPreTrainedModel):
     """BERT model for multiple choice tasks.
     This module is composed of the BERT model with a linear layer on top of
     the pooled output.
@@ -940,7 +1022,7 @@ class BertForMultipleChoice(PreTrainedBertModel):
     logits = model(input_ids, token_type_ids, input_mask)
     ```
     """
-    def __init__(self, config, num_choices=2):
+    def __init__(self, config, num_choices):
         super(BertForMultipleChoice, self).__init__(config)
         self.num_choices = num_choices
         self.bert = BertModel(config)
@@ -965,7 +1047,7 @@ class BertForMultipleChoice(PreTrainedBertModel):
             return reshaped_logits
 
 
-class BertForTokenClassification(PreTrainedBertModel):
+class BertForTokenClassification(BertPreTrainedModel):
     """BERT model for token-level classification.
     This module is composed of the BERT model with a linear layer on top of
     the full hidden state of the last layer.
@@ -1010,7 +1092,7 @@ class BertForTokenClassification(PreTrainedBertModel):
     logits = model(input_ids, token_type_ids, input_mask)
     ```
     """
-    def __init__(self, config, num_labels=2):
+    def __init__(self, config, num_labels):
         super(BertForTokenClassification, self).__init__(config)
         self.num_labels = num_labels
         self.bert = BertModel(config)
@@ -1038,7 +1120,7 @@ class BertForTokenClassification(PreTrainedBertModel):
             return logits
 
 
-class BertForQuestionAnswering(PreTrainedBertModel):
+class BertForQuestionAnswering(BertPreTrainedModel):
     """BERT model for Question Answering (span extraction).
     This module is composed of the BERT model with a linear layer on top of
     the sequence output that computes start_logits and end_logits

pytorch_pretrained_bert/optimization_openai.py

+# coding=utf-8
+# Copyright 2018 The Open AI Team Authors and The HugginFace Inc. team.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""PyTorch optimization for OpenAI GPT model."""
+
+import math
+import torch
+from torch.optim import Optimizer
+from torch.optim.optimizer import required
+from torch.nn.utils import clip_grad_norm_
+
+def warmup_cosine(x, warmup=0.002):
+    s = 1 if x <= warmup else 0
+    return s*(x/warmup) + (1-s)*(0.5 * (1 + torch.cos(math.pi * x)))
+
+def warmup_constant(x, warmup=0.002):
+    s = 1 if x <= warmup else 0
+    return s*(x/warmup) + (1-s)*1
+
+def warmup_linear(x, warmup=0.002):
+    s = 1 if x <= warmup else 0
+    return (s*(x/warmup) + (1-s))*(1-x)
+
+SCHEDULES = {
+    'warmup_cosine':warmup_cosine,
+    'warmup_constant':warmup_constant,
+    'warmup_linear':warmup_linear,
+}
+
+
+class OpenAIAdam(Optimizer):
+    """Implements Open AI version of Adam algorithm with weight decay fix.
+    """
+    def __init__(self, params, lr=required, schedule='warmup_linear', warmup=-1, t_total=-1,
+                 b1=0.9, b2=0.999, e=1e-8, weight_decay=0,
+                 vector_l2=False, max_grad_norm=-1, **kwargs):
+        if lr is not required and lr < 0.0:
+            raise ValueError("Invalid learning rate: {} - should be >= 0.0".format(lr))
+        if schedule not in SCHEDULES:
+            raise ValueError("Invalid schedule parameter: {}".format(schedule))
+        if not 0.0 <= warmup < 1.0 and not warmup == -1:
+            raise ValueError("Invalid warmup: {} - should be in [0.0, 1.0[ or -1".format(warmup))
+        if not 0.0 <= b1 < 1.0:
+            raise ValueError("Invalid b1 parameter: {}".format(b1))
+        if not 0.0 <= b2 < 1.0:
+            raise ValueError("Invalid b2 parameter: {}".format(b2))
+        if not e >= 0.0:
+            raise ValueError("Invalid epsilon value: {}".format(e))
+        defaults = dict(lr=lr, schedule=schedule, warmup=warmup, t_total=t_total,
+                        b1=b1, b2=b2, e=e, weight_decay=weight_decay, vector_l2=vector_l2,
+                        max_grad_norm=max_grad_norm)
+        super(OpenAIAdam, self).__init__(params, defaults)
+
+    def get_lr(self):
+        lr = []
+        for group in self.param_groups:
+            for p in group['params']:
+                state = self.state[p]
+                if len(state) == 0:
+                    return [0]
+                if group['t_total'] != -1:
+                    schedule_fct = SCHEDULES[group['schedule']]
+                    lr_scheduled = group['lr'] * schedule_fct(state['step']/group['t_total'], group['warmup'])
+                else:
+                    lr_scheduled = group['lr']
+                lr.append(lr_scheduled)
+        return lr
+
+    def step(self, closure=None):
+        """Performs a single optimization step.
+
+        Arguments:
+            closure (callable, optional): A closure that reevaluates the model
+                and returns the loss.
+        """
+        loss = None
+        if closure is not None:
+            loss = closure()
+
+        for group in self.param_groups:
+            for p in group['params']:
+                if p.grad is None:
+                    continue
+                grad = p.grad.data
+                if grad.is_sparse:
+                    raise RuntimeError('Adam does not support sparse gradients, please consider SparseAdam instead')
+
+                state = self.state[p]
+
+                # State initialization
+                if len(state) == 0:
+                    state['step'] = 0
+                    # Exponential moving average of gradient values
+                    state['exp_avg'] = torch.zeros_like(p.data)
+                    # Exponential moving average of squared gradient values
+                    state['exp_avg_sq'] = torch.zeros_like(p.data)
+
+                exp_avg, exp_avg_sq = state['exp_avg'], state['exp_avg_sq']
+                beta1, beta2 = group['b1'], group['b2']
+
+                state['step'] += 1
+
+                # Add grad clipping
+                if group['max_grad_norm'] > 0:
+                    clip_grad_norm_(p, group['max_grad_norm'])
+
+                # Decay the first and second moment running average coefficient
+                exp_avg.mul_(beta1).add_(1 - beta1, grad)
+                exp_avg_sq.mul_(beta2).addcmul_(1 - beta2, grad, grad)
+                denom = exp_avg_sq.sqrt().add_(group['e'])
+
+                bias_correction1 = 1 - beta1 ** state['step']
+                bias_correction2 = 1 - beta2 ** state['step']
+
+                if group['t_total'] != -1:
+                    schedule_fct = SCHEDULES[group['schedule']]
+                    lr_scheduled = group['lr'] * schedule_fct(state['step']/group['t_total'], group['warmup'])
+                else:
+                    lr_scheduled = group['lr']
+
+                step_size = lr_scheduled * math.sqrt(bias_correction2) / bias_correction1
+
+                p.data.addcdiv_(-step_size, exp_avg, denom)
+
+                # Add weight decay at the end (fixed version)
+                if (len(p.size()) > 1 or group['vector_l2']) and group['weight_decay'] > 0:
+                    p.data.add_(-lr_scheduled * group['weight_decay'], p.data)
+
+        return loss