main.py 13.7 KB
Newer Older
Timothy J. Baek's avatar
Timothy J. Baek committed
1
2
3
4
5
6
7
8
9
10
from fastapi import (
    FastAPI,
    Request,
    Depends,
    HTTPException,
    status,
    UploadFile,
    File,
    Form,
)
Timothy J. Baek's avatar
Timothy J. Baek committed
11
from fastapi.middleware.cors import CORSMiddleware
Timothy J. Baek's avatar
Timothy J. Baek committed
12
import os, shutil
13
14

from pathlib import Path
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
15
from typing import List
Timothy J. Baek's avatar
Timothy J. Baek committed
16

Timothy J. Baek's avatar
Timothy J. Baek committed
17
# from chromadb.utils import embedding_functions
Timothy J. Baek's avatar
Timothy J. Baek committed
18

Timothy J. Baek's avatar
Timothy J. Baek committed
19
20
21
22
23
from langchain_community.document_loaders import (
    WebBaseLoader,
    TextLoader,
    PyPDFLoader,
    CSVLoader,
Timothy J. Baek's avatar
Timothy J. Baek committed
24
    Docx2txtLoader,
Dave Bauman's avatar
Dave Bauman committed
25
    UnstructuredEPubLoader,
Timothy J. Baek's avatar
Timothy J. Baek committed
26
27
    UnstructuredWordDocumentLoader,
    UnstructuredMarkdownLoader,
28
    UnstructuredXMLLoader,
Marclass's avatar
Marclass committed
29
    UnstructuredRSTLoader,
Marclass's avatar
Marclass committed
30
    UnstructuredExcelLoader,
Timothy J. Baek's avatar
Timothy J. Baek committed
31
)
32
33
from langchain.text_splitter import RecursiveCharacterTextSplitter
from langchain.chains import RetrievalQA
34
from langchain_community.vectorstores import Chroma
35
36
37
38


from pydantic import BaseModel
from typing import Optional
39
import mimetypes
40
import uuid
41
import json
42
import time
43

44
45
46
47
48
49
50
51
52
53
54
55
56

from apps.web.models.documents import (
    Documents,
    DocumentForm,
    DocumentResponse,
)

from utils.misc import (
    calculate_sha256,
    calculate_sha256_string,
    sanitize_filename,
    extract_folders_after_data_docs,
)
57
from utils.utils import get_current_user, get_admin_user
58
59
60
61
62
63
64
from config import (
    UPLOAD_DIR,
    DOCS_DIR,
    EMBED_MODEL,
    CHROMA_CLIENT,
    CHUNK_SIZE,
    CHUNK_OVERLAP,
Timothy J. Baek's avatar
Timothy J. Baek committed
65
    RAG_TEMPLATE,
66
)
67
68
from constants import ERROR_MESSAGES

Timothy J. Baek's avatar
Timothy J. Baek committed
69
70
71
# EMBEDDING_FUNC = embedding_functions.SentenceTransformerEmbeddingFunction(
#     model_name=EMBED_MODEL
# )
Timothy J. Baek's avatar
Timothy J. Baek committed
72
73
74

app = FastAPI()

Timothy J. Baek's avatar
Timothy J. Baek committed
75
76
app.state.CHUNK_SIZE = CHUNK_SIZE
app.state.CHUNK_OVERLAP = CHUNK_OVERLAP
Timothy J. Baek's avatar
Timothy J. Baek committed
77
78
app.state.RAG_TEMPLATE = RAG_TEMPLATE

Timothy J. Baek's avatar
Timothy J. Baek committed
79

Timothy J. Baek's avatar
Timothy J. Baek committed
80
81
82
83
84
85
86
87
88
89
90
origins = ["*"]

app.add_middleware(
    CORSMiddleware,
    allow_origins=origins,
    allow_credentials=True,
    allow_methods=["*"],
    allow_headers=["*"],
)


Timothy J. Baek's avatar
Timothy J. Baek committed
91
class CollectionNameForm(BaseModel):
92
93
94
    collection_name: Optional[str] = "test"


Timothy J. Baek's avatar
Timothy J. Baek committed
95
96
97
98
class StoreWebForm(CollectionNameForm):
    url: str


Timothy J. Baek's avatar
Timothy J. Baek committed
99
def store_data_in_vector_db(data, collection_name) -> bool:
100
    text_splitter = RecursiveCharacterTextSplitter(
Timothy J. Baek's avatar
Timothy J. Baek committed
101
        chunk_size=app.state.CHUNK_SIZE, chunk_overlap=app.state.CHUNK_OVERLAP
102
103
104
105
106
107
    )
    docs = text_splitter.split_documents(data)

    texts = [doc.page_content for doc in docs]
    metadatas = [doc.metadata for doc in docs]

Timothy J. Baek's avatar
Timothy J. Baek committed
108
    try:
Timothy J. Baek's avatar
Timothy J. Baek committed
109
        collection = CHROMA_CLIENT.create_collection(name=collection_name)
110

Timothy J. Baek's avatar
Timothy J. Baek committed
111
112
113
114
115
116
117
118
119
120
        collection.add(
            documents=texts, metadatas=metadatas, ids=[str(uuid.uuid1()) for _ in texts]
        )
        return True
    except Exception as e:
        print(e)
        if e.__class__.__name__ == "UniqueConstraintError":
            return True

        return False
121
122


Timothy J. Baek's avatar
Timothy J. Baek committed
123
124
@app.get("/")
async def get_status():
Timothy J. Baek's avatar
Timothy J. Baek committed
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
    return {
        "status": True,
        "chunk_size": app.state.CHUNK_SIZE,
        "chunk_overlap": app.state.CHUNK_OVERLAP,
    }


@app.get("/chunk")
async def get_chunk_params(user=Depends(get_admin_user)):
    return {
        "status": True,
        "chunk_size": app.state.CHUNK_SIZE,
        "chunk_overlap": app.state.CHUNK_OVERLAP,
    }


class ChunkParamUpdateForm(BaseModel):
    chunk_size: int
    chunk_overlap: int


@app.post("/chunk/update")
async def update_chunk_params(
    form_data: ChunkParamUpdateForm, user=Depends(get_admin_user)
):
    app.state.CHUNK_SIZE = form_data.chunk_size
    app.state.CHUNK_OVERLAP = form_data.chunk_overlap

    return {
        "status": True,
        "chunk_size": app.state.CHUNK_SIZE,
        "chunk_overlap": app.state.CHUNK_OVERLAP,
    }
158
159


Timothy J. Baek's avatar
Timothy J. Baek committed
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
@app.get("/template")
async def get_rag_template(user=Depends(get_current_user)):
    return {
        "status": True,
        "template": app.state.RAG_TEMPLATE,
    }


class RAGTemplateForm(BaseModel):
    template: str


@app.post("/template/update")
async def update_rag_template(form_data: RAGTemplateForm, user=Depends(get_admin_user)):
    # TODO: check template requirements
Timothy J. Baek's avatar
Timothy J. Baek committed
175
176
177
    app.state.RAG_TEMPLATE = (
        form_data.template if form_data.template != "" else RAG_TEMPLATE
    )
Timothy J. Baek's avatar
Timothy J. Baek committed
178
179
180
    return {"status": True, "template": app.state.RAG_TEMPLATE}


181
class QueryDocForm(BaseModel):
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
182
183
184
185
186
    collection_name: str
    query: str
    k: Optional[int] = 4


187
188
189
@app.post("/query/doc")
def query_doc(
    form_data: QueryDocForm,
Timothy J. Baek's avatar
Timothy J. Baek committed
190
191
    user=Depends(get_current_user),
):
192
193
    try:
        collection = CHROMA_CLIENT.get_collection(
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
194
            name=form_data.collection_name,
195
        )
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
196
        result = collection.query(query_texts=[form_data.query], n_results=form_data.k)
197
198
199
200
201
202
203
        return result
    except Exception as e:
        print(e)
        raise HTTPException(
            status_code=status.HTTP_400_BAD_REQUEST,
            detail=ERROR_MESSAGES.DEFAULT(e),
        )
204
205


Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
206
207
208
209
210
211
class QueryCollectionsForm(BaseModel):
    collection_names: List[str]
    query: str
    k: Optional[int] = 4


Timothy J. Baek's avatar
Timothy J. Baek committed
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
def merge_and_sort_query_results(query_results, k):
    # Initialize lists to store combined data
    combined_ids = []
    combined_distances = []
    combined_metadatas = []
    combined_documents = []

    # Combine data from each dictionary
    for data in query_results:
        combined_ids.extend(data["ids"][0])
        combined_distances.extend(data["distances"][0])
        combined_metadatas.extend(data["metadatas"][0])
        combined_documents.extend(data["documents"][0])

    # Create a list of tuples (distance, id, metadata, document)
    combined = list(
        zip(combined_distances, combined_ids, combined_metadatas, combined_documents)
    )

    # Sort the list based on distances
    combined.sort(key=lambda x: x[0])

    # Unzip the sorted list
    sorted_distances, sorted_ids, sorted_metadatas, sorted_documents = zip(*combined)

    # Slicing the lists to include only k elements
    sorted_distances = list(sorted_distances)[:k]
    sorted_ids = list(sorted_ids)[:k]
    sorted_metadatas = list(sorted_metadatas)[:k]
    sorted_documents = list(sorted_documents)[:k]

    # Create the output dictionary
    merged_query_results = {
        "ids": [sorted_ids],
        "distances": [sorted_distances],
        "metadatas": [sorted_metadatas],
        "documents": [sorted_documents],
        "embeddings": None,
        "uris": None,
        "data": None,
    }

    return merged_query_results


257
258
@app.post("/query/collection")
def query_collection(
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
    form_data: QueryCollectionsForm,
    user=Depends(get_current_user),
):
    results = []

    for collection_name in form_data.collection_names:
        try:
            collection = CHROMA_CLIENT.get_collection(
                name=collection_name,
            )
            result = collection.query(
                query_texts=[form_data.query], n_results=form_data.k
            )
            results.append(result)
        except:
            pass

Timothy J. Baek's avatar
Timothy J. Baek committed
276
    return merge_and_sort_query_results(results, form_data.k)
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
277
278


279
@app.post("/web")
Timothy J. Baek's avatar
Timothy J. Baek committed
280
def store_web(form_data: StoreWebForm, user=Depends(get_current_user)):
281
282
283
284
    # "https://www.gutenberg.org/files/1727/1727-h/1727-h.htm"
    try:
        loader = WebBaseLoader(form_data.url)
        data = loader.load()
Timothy J. Baek's avatar
Timothy J. Baek committed
285
286
287
288
289
290

        collection_name = form_data.collection_name
        if collection_name == "":
            collection_name = calculate_sha256_string(form_data.url)[:63]

        store_data_in_vector_db(data, collection_name)
Timothy J. Baek's avatar
Timothy J. Baek committed
291
292
        return {
            "status": True,
Timothy J. Baek's avatar
Timothy J. Baek committed
293
            "collection_name": collection_name,
Timothy J. Baek's avatar
Timothy J. Baek committed
294
295
            "filename": form_data.url,
        }
296
297
298
299
300
301
302
303
    except Exception as e:
        print(e)
        raise HTTPException(
            status_code=status.HTTP_400_BAD_REQUEST,
            detail=ERROR_MESSAGES.DEFAULT(e),
        )


304
305
def get_loader(filename: str, file_content_type: str, file_path: str):
    file_ext = filename.split(".")[-1].lower()
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
    known_type = True

    known_source_ext = [
        "go",
        "py",
        "java",
        "sh",
        "bat",
        "ps1",
        "cmd",
        "js",
        "ts",
        "css",
        "cpp",
        "hpp",
        "h",
        "c",
        "cs",
        "sql",
        "log",
        "ini",
        "pl",
        "pm",
        "r",
        "dart",
        "dockerfile",
        "env",
        "php",
        "hs",
        "hsc",
        "lua",
        "nginxconf",
        "conf",
        "m",
        "mm",
        "plsql",
        "perl",
        "rb",
        "rs",
        "db2",
        "scala",
        "bash",
        "swift",
        "vue",
        "svelte",
    ]

    if file_ext == "pdf":
        loader = PyPDFLoader(file_path)
    elif file_ext == "csv":
        loader = CSVLoader(file_path)
    elif file_ext == "rst":
        loader = UnstructuredRSTLoader(file_path, mode="elements")
    elif file_ext == "xml":
        loader = UnstructuredXMLLoader(file_path)
    elif file_ext == "md":
        loader = UnstructuredMarkdownLoader(file_path)
363
    elif file_content_type == "application/epub+zip":
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
364
365
        loader = UnstructuredEPubLoader(file_path)
    elif (
366
        file_content_type
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
367
368
369
370
        == "application/vnd.openxmlformats-officedocument.wordprocessingml.document"
        or file_ext in ["doc", "docx"]
    ):
        loader = Docx2txtLoader(file_path)
371
    elif file_content_type in [
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
372
373
374
375
        "application/vnd.ms-excel",
        "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
    ] or file_ext in ["xls", "xlsx"]:
        loader = UnstructuredExcelLoader(file_path)
376
    elif file_ext in known_source_ext or file_content_type.find("text/") >= 0:
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
377
378
379
380
381
382
383
384
        loader = TextLoader(file_path)
    else:
        loader = TextLoader(file_path)
        known_type = False

    return loader, known_type


385
@app.post("/doc")
Timothy J. Baek's avatar
Timothy J. Baek committed
386
def store_doc(
Timothy J. Baek's avatar
Timothy J. Baek committed
387
    collection_name: Optional[str] = Form(None),
Timothy J. Baek's avatar
Timothy J. Baek committed
388
389
390
    file: UploadFile = File(...),
    user=Depends(get_current_user),
):
391
    # "https://www.gutenberg.org/files/1727/1727-h/1727-h.htm"
Timothy J. Baek's avatar
Timothy J. Baek committed
392

Timothy J. Baek's avatar
Timothy J. Baek committed
393
    print(file.content_type)
394
    try:
Timothy J. Baek's avatar
Timothy J. Baek committed
395
        filename = file.filename
Timothy J. Baek's avatar
Timothy J. Baek committed
396
        file_path = f"{UPLOAD_DIR}/{filename}"
397
        contents = file.file.read()
Timothy J. Baek's avatar
Timothy J. Baek committed
398
        with open(file_path, "wb") as f:
399
400
401
            f.write(contents)
            f.close()

Timothy J. Baek's avatar
Timothy J. Baek committed
402
403
404
405
406
        f = open(file_path, "rb")
        if collection_name == None:
            collection_name = calculate_sha256(f)[:63]
        f.close()

407
        loader, known_type = get_loader(file.filename, file.content_type, file_path)
Timothy J. Baek's avatar
Timothy J. Baek committed
408
        data = loader.load()
Timothy J. Baek's avatar
Timothy J. Baek committed
409
410
411
        result = store_data_in_vector_db(data, collection_name)

        if result:
Timothy J. Baek's avatar
Timothy J. Baek committed
412
413
414
415
            return {
                "status": True,
                "collection_name": collection_name,
                "filename": filename,
Timothy J. Baek's avatar
refac  
Timothy J. Baek committed
416
                "known_type": known_type,
Timothy J. Baek's avatar
Timothy J. Baek committed
417
            }
Timothy J. Baek's avatar
Timothy J. Baek committed
418
419
420
421
422
        else:
            raise HTTPException(
                status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
                detail=ERROR_MESSAGES.DEFAULT(),
            )
423
424
    except Exception as e:
        print(e)
Dave Bauman's avatar
Dave Bauman committed
425
426
427
428
429
430
431
432
433
434
        if "No pandoc was found" in str(e):
            raise HTTPException(
                status_code=status.HTTP_400_BAD_REQUEST,
                detail=ERROR_MESSAGES.PANDOC_NOT_INSTALLED,
            )
        else:
            raise HTTPException(
                status_code=status.HTTP_400_BAD_REQUEST,
                detail=ERROR_MESSAGES.DEFAULT(e),
            )
435
436


437
438
439
440
441
442
443
444
445
446
447
448
449
@app.get("/scan")
def scan_docs_dir(user=Depends(get_admin_user)):
    try:
        for path in Path(DOCS_DIR).rglob("./**/*"):
            if path.is_file() and not path.name.startswith("."):
                tags = extract_folders_after_data_docs(path)
                filename = path.name
                file_content_type = mimetypes.guess_type(path)

                f = open(path, "rb")
                collection_name = calculate_sha256(f)[:63]
                f.close()

Timothy J. Baek's avatar
Timothy J. Baek committed
450
451
452
                loader, known_type = get_loader(
                    filename, file_content_type[0], str(path)
                )
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
                data = loader.load()

                result = store_data_in_vector_db(data, collection_name)

                if result:
                    sanitized_filename = sanitize_filename(filename)
                    doc = Documents.get_doc_by_name(sanitized_filename)

                    if doc == None:
                        doc = Documents.insert_new_doc(
                            user.id,
                            DocumentForm(
                                **{
                                    "name": sanitized_filename,
                                    "title": filename,
                                    "collection_name": collection_name,
                                    "filename": filename,
                                    "content": (
                                        json.dumps(
                                            {
                                                "tags": list(
                                                    map(
                                                        lambda name: {"name": name},
                                                        tags,
                                                    )
                                                )
                                            }
                                        )
                                        if len(tags)
                                        else "{}"
                                    ),
                                }
                            ),
                        )

    except Exception as e:
        print(e)

    return True


Timothy J. Baek's avatar
Timothy J. Baek committed
494
@app.get("/reset/db")
495
496
def reset_vector_db(user=Depends(get_admin_user)):
    CHROMA_CLIENT.reset()
Timothy J. Baek's avatar
Timothy J. Baek committed
497
498
499


@app.get("/reset")
500
501
502
503
def reset(user=Depends(get_admin_user)) -> bool:
    folder = f"{UPLOAD_DIR}"
    for filename in os.listdir(folder):
        file_path = os.path.join(folder, filename)
Timothy J. Baek's avatar
Timothy J. Baek committed
504
        try:
505
506
507
508
            if os.path.isfile(file_path) or os.path.islink(file_path):
                os.unlink(file_path)
            elif os.path.isdir(file_path):
                shutil.rmtree(file_path)
Timothy J. Baek's avatar
Timothy J. Baek committed
509
        except Exception as e:
510
            print("Failed to delete %s. Reason: %s" % (file_path, e))
Timothy J. Baek's avatar
Timothy J. Baek committed
511

512
513
514
515
516
517
    try:
        CHROMA_CLIENT.reset()
    except Exception as e:
        print(e)

    return True