Initial commit: FourCastNet source code only

inference/inference_ensemble.py

+#BSD 3-Clause License
+#
+#Copyright (c) 2022, FourCastNet authors
+#All rights reserved.
+#
+#Redistribution and use in source and binary forms, with or without
+#modification, are permitted provided that the following conditions are met:
+#
+#1. Redistributions of source code must retain the above copyright notice, this
+#   list of conditions and the following disclaimer.
+#
+#2. Redistributions in binary form must reproduce the above copyright notice,
+#   this list of conditions and the following disclaimer in the documentation
+#   and/or other materials provided with the distribution.
+#
+#3. Neither the name of the copyright holder nor the names of its
+#   contributors may be used to endorse or promote products derived from
+#   this software without specific prior written permission.
+#
+#THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+#AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+#IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+#DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+#FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+#DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+#SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+#CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+#OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+#OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+#The code was authored by the following people:
+#
+#Jaideep Pathak - NVIDIA Corporation
+#Shashank Subramanian - NERSC, Lawrence Berkeley National Laboratory
+#Peter Harrington - NERSC, Lawrence Berkeley National Laboratory
+#Sanjeev Raja - NERSC, Lawrence Berkeley National Laboratory 
+#Ashesh Chattopadhyay - Rice University 
+#Morteza Mardani - NVIDIA Corporation 
+#Thorsten Kurth - NVIDIA Corporation 
+#David Hall - NVIDIA Corporation 
+#Zongyi Li - California Institute of Technology, NVIDIA Corporation 
+#Kamyar Azizzadenesheli - Purdue University 
+#Pedram Hassanzadeh - Rice University 
+#Karthik Kashinath - NVIDIA Corporation 
+#Animashree Anandkumar - California Institute of Technology, NVIDIA Corporation
+
+import os
+import time
+import numpy as np
+import argparse
+import sys
+sys.path.append(os.path.dirname(os.path.realpath(__file__)) + '/../')
+from numpy.core.numeric import False_
+import h5py
+import torch
+import torchvision
+from torchvision.utils import save_image
+import torch.nn as nn
+import torch.cuda.amp as amp
+import torch.distributed as dist
+from collections import OrderedDict
+from torch.nn.parallel import DistributedDataParallel
+import logging
+from utils import logging_utils
+from utils.weighted_acc_rmse import weighted_rmse_torch_channels, weighted_acc_torch_channels
+logging_utils.config_logger()
+from utils.YParams import YParams
+from utils.data_loader_multifiles import get_data_loader
+from networks.afnonet import AFNONet 
+import wandb
+import matplotlib.pyplot as plt
+import glob
+
+fld = "z500" # diff flds have diff decor times and hence differnt ics
+if fld == "z500" or fld == "2m_temperature" or fld == "t850":
+    DECORRELATION_TIME = 36 # 9 days (36) for z500, 2 (8 steps) days for u10, v10
+else:
+    DECORRELATION_TIME = 8 # 9 days (36) for z500, 2 (8 steps) days for u10, v10
+idxes = {"u10":0, "z500":14, "tp":0}
+
+def gaussian_perturb(x, level=0.01, device=0):
+    noise = level * torch.randn(x.shape).to(device, dtype=torch.float)
+    return (x + noise)
+
+def load_model(model, params, checkpoint_file): #, local_rank):
+    model.zero_grad()
+    checkpoint = torch.load(checkpoint_file)
+    try:
+        new_state_dict = OrderedDict()
+        for key, val in checkpoint['model_state'].items():
+            name = key[7:]
+            if name != 'ged':
+                new_state_dict[name] = val  
+        model.load_state_dict(new_state_dict)
+    except:
+        model.load_state_dict(checkpoint['model_state'])
+    model.eval()
+    return model
+
+def downsample(x, scale=0.125):
+    return torch.nn.functional.interpolate(x, scale_factor=scale, mode='bilinear')
+
+def setup(params):
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    #get data loader
+    valid_data_loader, valid_dataset = get_data_loader(params, params.inf_data_path, dist.is_initialized(), train=False)
+    img_shape_x = valid_dataset.img_shape_x
+    img_shape_y = valid_dataset.img_shape_y
+    params.img_shape_x = img_shape_x
+    params.img_shape_y = img_shape_y
+    if params.log_to_screen:
+        logging.info('Loading trained model checkpoint from {}'.format(params['best_checkpoint_path']))
+
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.out_channels)
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)
+    params['N_in_channels'] = n_in_channels
+    params['N_out_channels'] = n_out_channels
+    params.means = np.load(params.global_means_path)[0, out_channels] # needed to standardize wind data
+    params.stds = np.load(params.global_stds_path)[0, out_channels]
+    # load the model
+    if params.nettype == 'afno':
+        model = AFNONet(params).to(device) 
+    checkpoint_file  = params['best_checkpoint_path']
+    model = load_model(model, params, checkpoint_file)
+    model = model.to(device)
+
+    # load the validation data
+    files_paths = glob.glob(params.inf_data_path + "/*.h5")
+    files_paths.sort()
+    if params.log_to_screen:
+        logging.info('Loading validation data')
+        logging.info('Validation data from {}'.format(files_paths[0]))
+
+    # which year
+    yr = 0
+    valid_data_full = h5py.File(files_paths[yr], 'r')['fields']
+
+    return valid_data_full, model
+
+def autoregressive_inference(params, ic, valid_data_full, model): 
+    ic = int(ic) 
+    #initialize global variables
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    exp_dir = params['experiment_dir'] 
+    dt = int(params.dt)
+    prediction_length = int(params.prediction_length/dt)
+    n_history = params.n_history
+    img_shape_x = params.img_shape_x
+    img_shape_y = params.img_shape_y
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.out_channels)
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)
+    means = params.means
+    stds = params.stds
+
+    n_pert = params.n_pert
+
+    #initialize memory for image sequences and RMSE/ACC
+    valid_loss = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    acc = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    seq_real = torch.zeros((prediction_length+n_history, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    seq_pred = torch.zeros((prediction_length+n_history, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+
+    valid_data = valid_data_full[ic:(ic+prediction_length*dt+n_history*dt):dt, in_channels, 0:720] #extract valid data from first year
+    # standardize
+    valid_data = (valid_data - means)/stds
+    valid_data = torch.as_tensor(valid_data).to(device, dtype=torch.float)
+    #load time means
+    m = torch.as_tensor((np.load(params.time_means_path)[0][out_channels] - means)/stds)[:, 0:img_shape_x] # climatology
+    m = torch.unsqueeze(m, 0)
+    m = m.to(device)
+    std = torch.as_tensor(stds[:,0,0]).to(device, dtype=torch.float)
+
+    #autoregressive inference
+    if params.log_to_screen:
+      logging.info('Begin autoregressive inference')
+    
+    for pert in range(n_pert):
+      logging.info('Running ensemble {}/{}'.format(pert+1, n_pert))
+      with torch.no_grad():
+        for i in range(valid_data.shape[0]): 
+          if i==0: #start of sequence
+            first = valid_data[0:n_history+1]
+            future = valid_data[n_history+1]
+            for h in range(n_history+1):
+              seq_real[h] = first[h*n_in_channels : (h+1)*n_in_channels][0:n_out_channels] #extract history from 1st 
+              seq_pred[h] = seq_real[h]
+            first = gaussian_perturb(first, level=params.n_level, device=device) # perturb the ic
+            future_pred = model(first)
+          else:
+            if i < prediction_length-1:
+              future = valid_data[n_history+i+1]
+            future_pred = model(future_pred) #autoregressive step
+
+          if i < prediction_length-1: #not on the last step
+            seq_pred[n_history+i+1] += torch.squeeze(future_pred,0)  # add up predictions and average later
+            seq_real[n_history+i+1] += future
+      
+    #Compute metrics 
+    for i in range(valid_data.shape[0]): 
+      if i>0:
+        # avg images
+        seq_pred[i] /= n_pert
+        seq_real[i] /= n_pert
+      pred = torch.unsqueeze(seq_pred[i], 0)
+      tar = torch.unsqueeze(seq_real[i], 0)
+      valid_loss[i] = weighted_rmse_torch_channels(pred, tar) * std
+      acc[i] = weighted_acc_torch_channels(pred-m, tar-m)
+
+      if params.log_to_screen:
+        idx = idxes[fld] 
+        logging.info('Predicted timestep {} of {}. {} RMS Error: {}, ACC: {}'.format(i, prediction_length, fld, valid_loss[i, idx], acc[i, idx]))
+
+    valid_loss = valid_loss.cpu().numpy()
+    acc = acc.cpu().numpy()
+    return np.expand_dims(valid_loss,0), np.expand_dims(acc, 0)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--run_num", default='00', type=str)
+    parser.add_argument("--yaml_config", default='./config/AFNO.yaml', type=str)
+    parser.add_argument("--config", default='full_field', type=str)
+    parser.add_argument("--override_dir", default=None, type = str, help = 'Path to store inference outputs; must also set --weights arg')
+    parser.add_argument("--n_pert", default=100, type=int)
+    parser.add_argument("--n_level", default=0.3, type=float)
+    parser.add_argument("--weights", default=None, type=str, help = 'Path to model weights, for use with override_dir option')
+    
+    args = parser.parse_args()
+    params = YParams(os.path.abspath(args.yaml_config), args.config)
+    params['world_size'] = 1
+    if 'WORLD_SIZE' in os.environ:
+      params['world_size'] = int(os.environ['WORLD_SIZE'])
+    params['n_pert'] = args.n_pert
+    world_rank = 0
+    world_size = params.world_size
+    params['global_batch_size'] = params.batch_size
+
+    local_rank = 0
+    if params['world_size'] > 1:
+      local_rank = int(os.environ["LOCAL_RANK"])
+      dist.init_process_group(backend='nccl',
+                              init_method='env://')
+      args.gpu = local_rank
+      world_rank = dist.get_rank()
+      world_size = dist.get_world_size()
+      params['global_batch_size'] = params.batch_size
+      #params['batch_size'] = int(params.batch_size//params['world_size'])
+
+    torch.cuda.set_device(local_rank)
+    torch.backends.cudnn.benchmark = True
+
+    # Set up directory
+    if args.override_dir is not None:
+      assert args.weights is not None, 'Must set --weights argument if using --override_dir'
+      expDir = args.override_dir
+    else:
+      assert args.weights is None, 'Cannot use --weights argument without also using --override_dir' 
+      expDir = os.path.join(params.exp_dir, args.config, str(args.run_num))
+
+    if world_rank==0:
+      if not os.path.isdir(expDir):
+        os.makedirs(expDir)
+
+    params['experiment_dir'] = os.path.abspath(expDir)
+    params['best_checkpoint_path'] = args.weights if args.override_dir is not None else os.path.join(expDir, 'training_checkpoints/best_ckpt.tar')
+    params['resuming'] = False
+    params['local_rank'] = local_rank
+
+    # this will be the wandb name
+    params['name'] = args.config + '_' + str(args.run_num)
+    params['group'] = args.config
+
+    if world_rank==0:
+      logging_utils.log_to_file(logger_name=None, log_filename=os.path.join(expDir, 'inference_out.log'))
+      logging_utils.log_versions()
+      params.log()
+
+    params['log_to_wandb'] = (world_rank==0) and params['log_to_wandb']
+    params['log_to_screen'] = (world_rank==0) and params['log_to_screen']
+
+    n_ics = params['n_initial_conditions']
+
+    if fld == "z500" or fld == "t850":
+        n_samples_per_year = 1336
+    else:
+        n_samples_per_year = 1460
+
+    if params["ics_type"] == 'default':
+        num_samples = n_samples_per_year-params.prediction_length
+        stop = num_samples
+        ics = np.arange(0, stop, DECORRELATION_TIME)
+        n_ics = len(ics)
+        logging.info("Inference for {} initial conditions".format(n_ics))
+    elif params["ics_type"] == "datetime":
+        date_strings = params["date_strings"]
+        ics = []
+        for date in date_strings:
+            date_obj = datetime.strptime(date,'%Y-%m-%d %H:%M:%S') 
+            day_of_year = date_obj.timetuple().tm_yday - 1
+            hour_of_day = date_obj.timetuple().tm_hour
+            hours_since_jan_01_epoch = 24*day_of_year + hour_of_day
+            ics.append(int(hours_since_jan_01_epoch/6))
+        print(ics)
+        n_ics = len(ics)
+
+    try:
+        autoregressive_inference_filetag = params["inference_file_tag"]
+    except:
+        autoregressive_inference_filetag = ""
+
+
+    params.n_level = args.n_level
+    autoregressive_inference_filetag += "_" + str(params.n_level) + "_" + str(params.n_pert) + "ens_" + fld
+    # get data and models
+    valid_data_full, model = setup(params)
+
+    #initialize lists for image sequences and RMSE/ACC
+    valid_loss = np.zeros
+    acc = []
+
+    # run autoregressive inference for multiple initial conditions
+    # parallelize over initial conditions
+    if world_size > 1:
+      tot_ics = len(ics)
+      ics_per_proc = n_ics//world_size
+      ics = ics[ics_per_proc*world_rank:ics_per_proc*(world_rank+1)] if world_rank < world_size - 1 else ics[(world_size - 1)*ics_per_proc:]
+      n_ics = len(ics)
+      logging.info('Rank %d running ics %s'%(world_rank, str(ics)))
+
+    for i, ic in enumerate(ics):
+      t0 = time.time()
+      logging.info("Initial condition {} of {}".format(i+1, n_ics))
+      vl, a = autoregressive_inference(params, ic, valid_data_full, model)
+      if i ==0:
+        valid_loss = vl
+        acc = a
+      else:
+        valid_loss = np.concatenate((valid_loss, vl), 0)
+        acc = np.concatenate((acc, a), 0)
+      t1 = time.time() - t0
+      logging.info("Time for inference for ic {} = {}".format(i, t1))
+
+    prediction_length = acc[0].shape[0]
+    n_out_channels = acc[0].shape[1]
+
+    #save predictions and loss
+    h5name = os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions'+ autoregressive_inference_filetag +'.h5')
+    if dist.is_initialized(): 
+      if params.log_to_screen:
+        logging.info("Saving files at {}".format(h5name))
+        logging.info("array shapes: %s"%str((tot_ics, prediction_length, n_out_channels)))
+
+      dist.barrier()
+      from mpi4py import MPI
+      with h5py.File(h5name, 'a', driver='mpio', comm=MPI.COMM_WORLD) as f:
+        if "rmse" in f.keys() or "acc" in f.keys():
+            del f["acc"]
+            del f["rmse"]
+        f.create_dataset("rmse", shape = (tot_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f.create_dataset("acc",  shape = (tot_ics, prediction_length, n_out_channels), dtype =np.float32)
+        start = world_rank*ics_per_proc
+        f["rmse"][start:start+n_ics] = valid_loss
+        f["acc"][start:start+n_ics] = acc
+      dist.barrier()
+    else:
+      if params.log_to_screen:
+        logging.info("Saving files at {}".format(os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions' + autoregressive_inference_filetag + '.h5')))
+      with h5py.File(os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions'+ autoregressive_inference_filetag +'.h5'), 'a') as f:
+        try:
+          f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        except:
+          del f["rmse"]
+          f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+          f["rmse"][...] = valid_loss
+
+        try:
+          f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        except:
+          del f["acc"]
+          f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+          f["acc"][...] = acc   
+

inference/inference_ensemble_precip.py

+#BSD 3-Clause License
+#
+#Copyright (c) 2022, FourCastNet authors
+#All rights reserved.
+#
+#Redistribution and use in source and binary forms, with or without
+#modification, are permitted provided that the following conditions are met:
+#
+#1. Redistributions of source code must retain the above copyright notice, this
+#   list of conditions and the following disclaimer.
+#
+#2. Redistributions in binary form must reproduce the above copyright notice,
+#   this list of conditions and the following disclaimer in the documentation
+#   and/or other materials provided with the distribution.
+#
+#3. Neither the name of the copyright holder nor the names of its
+#   contributors may be used to endorse or promote products derived from
+#   this software without specific prior written permission.
+#
+#THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+#AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+#IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+#DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+#FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+#DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+#SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+#CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+#OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+#OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+#The code was authored by the following people:
+#
+#Jaideep Pathak - NVIDIA Corporation
+#Shashank Subramanian - NERSC, Lawrence Berkeley National Laboratory
+#Peter Harrington - NERSC, Lawrence Berkeley National Laboratory
+#Sanjeev Raja - NERSC, Lawrence Berkeley National Laboratory 
+#Ashesh Chattopadhyay - Rice University 
+#Morteza Mardani - NVIDIA Corporation 
+#Thorsten Kurth - NVIDIA Corporation 
+#David Hall - NVIDIA Corporation 
+#Zongyi Li - California Institute of Technology, NVIDIA Corporation 
+#Kamyar Azizzadenesheli - Purdue University 
+#Pedram Hassanzadeh - Rice University 
+#Karthik Kashinath - NVIDIA Corporation 
+#Animashree Anandkumar - California Institute of Technology, NVIDIA Corporation
+
+import os
+import time
+import numpy as np
+import argparse
+import sys
+sys.path.append(os.path.dirname(os.path.realpath(__file__)) + '/../')
+from numpy.core.numeric import False_
+import h5py
+import torch
+import torchvision
+from torchvision.utils import save_image
+import torch.nn as nn
+import torch.cuda.amp as amp
+import torch.distributed as dist
+from collections import OrderedDict
+from torch.nn.parallel import DistributedDataParallel
+import logging
+from utils import logging_utils
+from utils.weighted_acc_rmse import weighted_rmse_torch_channels, weighted_acc_torch_channels, unlog_tp_torch, top_quantiles_error_torch
+logging_utils.config_logger()
+from utils.YParams import YParams
+from utils.data_loader_multifiles import get_data_loader
+from networks.afnonet import AFNONet, PrecipNet 
+import wandb
+import matplotlib.pyplot as plt
+import glob
+from datetime import datetime
+DECORRELATION_TIME = 8 # 2 days for preicp
+
+
+def gaussian_perturb(x, level=0.01, device=0):
+    noise = level * torch.randn(x.shape).to(device, dtype=torch.float)
+    return (x + noise)
+
+def load_model(model, params, checkpoint_file):
+    model.zero_grad()
+    checkpoint = torch.load(checkpoint_file)
+    try:
+        new_state_dict = OrderedDict()
+        for key, val in checkpoint['model_state'].items():
+            name = key[7:]
+            if name != 'ged':
+                new_state_dict[name] = val  
+        model.load_state_dict(new_state_dict)
+    except:
+        model.load_state_dict(checkpoint['model_state'])
+    model.eval()
+    return model
+
+
+def setup(params):
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    #get data loader
+    valid_data_loader, valid_dataset = get_data_loader(params, params.inf_data_path, dist.is_initialized(), train=False)
+    img_shape_x = valid_dataset.img_shape_x
+    img_shape_y = valid_dataset.img_shape_y
+    params.img_shape_x = img_shape_x
+    params.img_shape_y = img_shape_y
+    if params.log_to_screen:
+        logging.info('Loading trained model checkpoint from {}'.format(params['best_checkpoint_path']))
+
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.in_channels) # same as in for the wind model
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)
+    params['N_in_channels'] = n_in_channels
+    params['N_out_channels'] = n_out_channels
+    params.means = np.load(params.global_means_path)[0, out_channels] # needed to standardize wind data
+    params.stds = np.load(params.global_stds_path)[0, out_channels]
+    # load the models
+    # load wind model
+    if params.nettype_wind == 'afno':
+        model_wind = AFNONet(params).to(device) 
+    checkpoint_file  = params['model_wind_path']
+    model_wind = load_model(model_wind, params, checkpoint_file)
+    model_wind = model_wind.to(device)
+
+    out_channels = np.array(params.out_channels) # change out channels for precip model
+    n_out_channels = len(out_channels)
+    params['N_out_channels'] = n_out_channels
+    if params.nettype == 'afno':
+        model = AFNONet(params).to(device) 
+    model = PrecipNet(params, backbone=model).to(device)
+    checkpoint_file  = params['best_checkpoint_path']
+    model = load_model(model, params, checkpoint_file)
+    model = model.to(device)
+
+    # load the validation data
+    files_paths = glob.glob(params.inf_data_path + "/*.h5")
+    files_paths.sort()
+    if params.log_to_screen:
+        logging.info('Loading validation data')
+        logging.info('Validation data from {}'.format(files_paths[0]))
+    valid_data_full = h5py.File(files_paths[0], 'r')['fields']
+    # precip paths
+    path = params.precip + '/out_of_sample'
+    precip_paths = glob.glob(path + "/*.h5")
+    precip_paths.sort()
+    if params.log_to_screen:
+        logging.info('Loading validation precip data')
+        logging.info('Validation data from {}'.format(precip_paths[0]))
+    valid_data_tp_full = h5py.File(precip_paths[0], 'r')['tp']
+
+    return valid_data_full, valid_data_tp_full, model_wind, model
+
+def autoregressive_inference(params, ic, valid_data_full, valid_data_tp_full, model_wind, model):
+    ic = int(ic) 
+    #initialize global variables
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    exp_dir = params['experiment_dir'] 
+    dt = int(params.dt)
+    prediction_length = int(params.prediction_length/dt)
+    n_history = params.n_history
+    img_shape_x = params.img_shape_x
+    img_shape_y = params.img_shape_y
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.out_channels)
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)
+    means = params.means
+    stds = params.stds
+
+    n_pert = params.n_pert
+
+    #initialize memory for image sequences and RMSE/ACC
+    valid_loss = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    acc = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    acc_unweighted = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    tqe = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    # wind seqs
+    seq_real = torch.zeros((prediction_length+n_history, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    seq_pred = torch.zeros((prediction_length+n_history, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    # precip sequences
+    seq_real_tp = torch.zeros((prediction_length, n_out_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    seq_pred_tp = torch.zeros((prediction_length, n_out_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+
+    valid_data = valid_data_full[ic:(ic+prediction_length*dt+n_history*dt):dt, in_channels, 0:720] #extract valid data from first year
+    # standardize
+    valid_data = (valid_data - means)/stds
+    valid_data = torch.as_tensor(valid_data).to(device, dtype=torch.float)
+    len_ic = prediction_length*dt
+    valid_data_tp = valid_data_tp_full[ic:(ic+prediction_length*dt):dt, 0:720].reshape(len_ic,n_out_channels,720,img_shape_y) #extract valid data from first year
+    # log normalize
+    eps = params.precip_eps
+    valid_data_tp = np.log1p(valid_data_tp/eps)
+    valid_data_tp = torch.as_tensor(valid_data_tp).to(device, dtype=torch.float)
+    #load time means
+    m = torch.as_tensor(np.load(params.time_means_path_tp)[0][out_channels])[:, 0:img_shape_x] # climatology
+    m = torch.unsqueeze(m, 0)
+    m = m.to(device)
+
+    if params.log_to_screen:
+      logging.info('Begin autoregressive+tp inference')
+
+    for pert in range(n_pert):
+      logging.info('Running ensemble {}/{}'.format(pert+1, n_pert))
+      with torch.no_grad():
+        for i in range(valid_data.shape[0]): 
+          if i==0: #start of sequence
+            first = valid_data[0:n_history+1]
+            first_tp = valid_data_tp[0:1]
+            future = valid_data[n_history+1]
+            future_tp = valid_data_tp[1]
+            for h in range(n_history+1):
+              seq_real[h] = first[h*n_in_channels:(h+1)*n_in_channels][0:n_in_channels] #extract history from 1st 
+              seq_pred[h] = seq_real[h]
+            seq_real_tp[0] = unlog_tp_torch(first_tp)
+            seq_pred_tp[0] = unlog_tp_torch(first_tp)
+            first = gaussian_perturb(first, level=params.n_level, device=device) # perturb the ic
+            future_pred = model_wind(first)
+            future_pred_tp = model(future_pred)
+          else:
+            if i < prediction_length-1:
+              future = valid_data[n_history+i+1]
+              future_tp = valid_data_tp[i+1]
+            future_pred = model_wind(future_pred) #autoregressive step
+            future_pred_tp = model(future_pred) # tp diagnosis
+
+          if i < prediction_length-1: #not on the last step
+            seq_pred_tp[n_history+i+1] += unlog_tp_torch(torch.squeeze(future_pred_tp,0))  # add up predictions and average later
+            seq_real_tp[n_history+i+1] += unlog_tp_torch(future_tp)
+      
+    #Compute metrics 
+    for i in range(valid_data.shape[0]): 
+      if i>0:
+        # avg images
+        seq_pred_tp[i] /= n_pert
+        seq_real_tp[i] /= n_pert
+      pred = torch.unsqueeze(seq_pred_tp[i], 0)
+      tar = torch.unsqueeze(seq_real_tp[i], 0)
+      valid_loss[i] = weighted_rmse_torch_channels(pred, tar)
+      acc[i] = weighted_acc_torch_channels(pred-m, tar-m)
+      tqe[i] = top_quantiles_error_torch(pred, tar)
+
+      if params.log_to_screen:
+        logging.info('Timestep {} of {}. TP RMS Error: {}, ACC: {}'.format((i), prediction_length, valid_loss[i,0], acc[i,0]))
+      
+    seq_real_tp = seq_real_tp.cpu().numpy()
+    seq_pred_tp = seq_pred_tp.cpu().numpy()
+    valid_loss = valid_loss.cpu().numpy()
+    acc = acc.cpu().numpy()
+    acc_unweighted = acc_unweighted.cpu().numpy()
+    tqe = tqe.cpu().numpy()
+    return np.expand_dims(valid_loss, 0), \
+           np.expand_dims(acc, 0), \
+           np.expand_dims(tqe, 0)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--run_num", default='00', type=str)
+    parser.add_argument("--yaml_config", default='./config/AFNO.yaml', type=str)
+    parser.add_argument("--config", default='full_field', type=str)
+    parser.add_argument("--n_level", default = 0.3, type = float)
+    parser.add_argument("--n_pert", default=100, type=int)
+    parser.add_argument("--override_dir", default=None, type = str, help = 'Path to store inference outputs; must also set --weights arg')
+    parser.add_argument("--weights", default=None, type=str, help = 'Path to model weights, for use with override_dir option')
+
+    args = parser.parse_args()
+    params = YParams(os.path.abspath(args.yaml_config), args.config)
+    params['world_size'] = 1
+    if 'WORLD_SIZE' in os.environ:
+      params['world_size'] = int(os.environ['WORLD_SIZE'])
+    world_rank = 0
+    local_rank = 0
+    if params['world_size'] > 1:
+      local_rank = int(os.environ["LOCAL_RANK"])
+      dist.init_process_group(backend='nccl', init_method='env://')
+      args.gpu = local_rank
+      world_rank = dist.get_rank()
+      world_size = dist.get_world_size()
+      params['global_batch_size'] = params.batch_size
+#      params['batch_size'] = int(params.batch_size//params['world_size'])
+    torch.cuda.set_device(local_rank)
+    torch.backends.cudnn.benchmark = True
+
+    # Set up directory
+    if args.override_dir is not None:
+      assert args.weights is not None, 'Must set --weights argument if using --override_dir'
+      expDir = args.override_dir
+    else: 
+      assert args.weights is None, 'Cannot use --weights argument without also using --override_dir'
+      expDir = os.path.join(params.exp_dir, args.config, str(args.run_num))
+
+    if  world_rank==0:
+      if not os.path.isdir(expDir):
+        os.makedirs(expDir)
+
+    params['experiment_dir'] = os.path.abspath(expDir)
+    params['best_checkpoint_path'] = args.weights if args.override_dir is not None else os.path.join(expDir, 'training_checkpoints/best_ckpt.tar')
+    args.resuming = False
+    params['resuming'] = args.resuming
+    params['local_rank'] = local_rank
+    # this will be the wandb name
+    params['name'] = args.config + '_' + str(args.run_num)
+    params['group'] = args.config
+    if world_rank==0:
+      logging_utils.log_to_file(logger_name=None, log_filename=os.path.join(expDir, 'inference_out.log'))
+      logging_utils.log_versions()
+      params.log()
+    params['log_to_wandb'] = (world_rank==0) and params['log_to_wandb']
+    params['log_to_screen'] = (world_rank==0) and params['log_to_screen']
+
+    n_ics = params['n_initial_conditions']
+
+    if params["ics_type"] == 'default':
+        num_samples = 1460 - params.prediction_length
+        stop = num_samples
+        ics = np.arange(0, stop, DECORRELATION_TIME)
+        n_ics = len(ics)
+        logging.info("Inference for {} initial conditions".format(n_ics))
+    elif params["ics_type"] == "datetime":
+        date_strings = params["date_strings"]
+        ics = []
+        for date in date_strings:
+            date_obj = datetime.strptime(date,'%Y-%m-%d %H:%M:%S') 
+            day_of_year = date_obj.timetuple().tm_yday - 1
+            hour_of_day = date_obj.timetuple().tm_hour
+            hours_since_jan_01_epoch = 24*day_of_year + hour_of_day
+            ics.append(int(hours_since_jan_01_epoch/6))
+
+    try:
+        autoregressive_inference_filetag = params["inference_file_tag"]
+    except:
+        autoregressive_inference_filetag = ""
+
+    n_level = args.n_level
+    params.n_level = n_level
+    params.n_pert = args.n_pert
+    logging.info("Doing level = {}".format(n_level))
+    autoregressive_inference_filetag += "_" + str(params.n_level) + "_" + str(params.n_pert) + "ens_tp"
+
+    # get data and models
+    valid_data_full, valid_data_tp_full, model_wind, model = setup(params)
+
+    #initialize lists for image sequences and RMSE/ACC
+    valid_loss = np.zeros
+    acc = []
+    tqe = []
+
+    # run autoregressive inference for multiple initial conditions
+    # parallelize over initial conditions
+    if world_size > 1:
+      tot_ics = len(ics)
+      ics_per_proc = n_ics//world_size
+      ics = ics[ics_per_proc*world_rank:ics_per_proc*(world_rank+1)] if world_rank < world_size - 1 else ics[(world_size - 1)*ics_per_proc:]
+      n_ics = len(ics)
+      logging.info('Rank %d running ics %s'%(world_rank, str(ics)))
+
+    for i, ic in enumerate(ics):
+      t1 = time.time()
+      logging.info("Initial condition {} of {}".format(i+1, n_ics))
+      vl, a, tq = autoregressive_inference(params, ic, valid_data_full, valid_data_tp_full, model_wind, model)
+      if i == 0:
+        valid_loss = vl
+        acc = a
+        tqe = tq
+      else:
+        valid_loss = np.concatenate((valid_loss, vl), 0)
+        acc = np.concatenate((acc, a), 0)
+        tqe = np.concatenate((tqe, tq), 0)
+      t2 = time.time()-t1
+      logging.info("Time for inference for ic {} = {}".format(i, t2))
+
+    prediction_length = acc[0].shape[0]
+    n_out_channels = acc[0].shape[1]
+
+    #save predictions and loss
+       
+    #save predictions and loss
+    h5name = os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions'+ autoregressive_inference_filetag +'.h5')
+    if dist.is_initialized(): 
+      if params.log_to_screen:
+        logging.info("Saving files at {}".format(h5name))
+        logging.info("array shapes: %s"%str((tot_ics, prediction_length, n_out_channels)))
+
+      dist.barrier()
+      from mpi4py import MPI
+      with h5py.File(h5name, 'a', driver='mpio', comm=MPI.COMM_WORLD) as f:
+        if "rmse" in f.keys() or "acc" in f.keys():
+          del f["acc"]
+          del f["rmse"]
+        f.create_dataset("rmse", shape = (tot_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f.create_dataset("acc",  shape = (tot_ics, prediction_length, n_out_channels), dtype =np.float32)
+        start = world_rank*ics_per_proc
+        f["rmse"][start:start+n_ics] = valid_loss
+        f["acc"][start:start+n_ics] = acc
+      dist.barrier()
+    else:
+      if params.log_to_screen:
+        logging.info("Saving files at {}".format(os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions' + autoregressive_inference_filetag + '.h5')))
+      with h5py.File(os.path.join(params['experiment_dir'], 'ens_autoregressive_predictions'+ autoregressive_inference_filetag +'.h5'), 'a') as f:
+        try:
+          f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        except:
+          del f["rmse"]
+          f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+          f["rmse"][...] = valid_loss
+
+        try:
+          f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        except:
+          del f["acc"]
+          f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+          f["acc"][...] = acc   
+        try:
+            f.create_dataset("tqe", data = tqe, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        except:
+            del f["tqe"]
+            f.create_dataset("tqe", data = tqe, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+            f["tqe"][...] = tqe

inference/inference_precip.py

+#BSD 3-Clause License
+#
+#Copyright (c) 2022, FourCastNet authors
+#All rights reserved.
+#
+#Redistribution and use in source and binary forms, with or without
+#modification, are permitted provided that the following conditions are met:
+#
+#1. Redistributions of source code must retain the above copyright notice, this
+#   list of conditions and the following disclaimer.
+#
+#2. Redistributions in binary form must reproduce the above copyright notice,
+#   this list of conditions and the following disclaimer in the documentation
+#   and/or other materials provided with the distribution.
+#
+#3. Neither the name of the copyright holder nor the names of its
+#   contributors may be used to endorse or promote products derived from
+#   this software without specific prior written permission.
+#
+#THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+#AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+#IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+#DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+#FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+#DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+#SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+#CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+#OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+#OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+#The code was authored by the following people:
+#
+#Jaideep Pathak - NVIDIA Corporation
+#Shashank Subramanian - NERSC, Lawrence Berkeley National Laboratory
+#Peter Harrington - NERSC, Lawrence Berkeley National Laboratory
+#Sanjeev Raja - NERSC, Lawrence Berkeley National Laboratory 
+#Ashesh Chattopadhyay - Rice University 
+#Morteza Mardani - NVIDIA Corporation 
+#Thorsten Kurth - NVIDIA Corporation 
+#David Hall - NVIDIA Corporation 
+#Zongyi Li - California Institute of Technology, NVIDIA Corporation 
+#Kamyar Azizzadenesheli - Purdue University 
+#Pedram Hassanzadeh - Rice University 
+#Karthik Kashinath - NVIDIA Corporation 
+#Animashree Anandkumar - California Institute of Technology, NVIDIA Corporation
+
+import os
+import sys
+import time
+import numpy as np
+import argparse
+sys.path.append(os.path.dirname(os.path.realpath(__file__)) + '/../')
+from numpy.core.numeric import False_
+import h5py
+import torch
+import torchvision
+from torchvision.utils import save_image
+import torch.nn as nn
+import torch.cuda.amp as amp
+import torch.distributed as dist
+from collections import OrderedDict
+from torch.nn.parallel import DistributedDataParallel
+import logging
+from utils import logging_utils
+from utils.weighted_acc_rmse import weighted_rmse_torch_channels, weighted_acc_torch_channels, unlog_tp_torch, top_quantiles_error_torch
+logging_utils.config_logger()
+from utils.YParams import YParams
+from utils.data_loader_multifiles import get_data_loader
+from networks.afnonet import AFNONet, PrecipNet
+import wandb
+import matplotlib.pyplot as plt
+import glob
+from datetime import datetime
+
+DECORRELATION_TIME = 8 # 2 days for preicp
+
+def gaussian_perturb(x, level=0.01, device=0):
+    noise = level * torch.randn(x.shape).to(device, dtype=torch.float)
+    return (x + noise)
+
+def load_model(model, params, checkpoint_file):
+    model.zero_grad()
+    checkpoint_fname = checkpoint_file
+    checkpoint = torch.load(checkpoint_fname)
+    try:
+        new_state_dict = OrderedDict()
+        for key, val in checkpoint['model_state'].items():
+            name = key[7:]
+            if name != 'ged':
+                new_state_dict[name] = val  
+        model.load_state_dict(new_state_dict)
+    except:
+        model.load_state_dict(checkpoint['model_state'])
+    model.eval()
+    return model
+
+def downsample(x, scale=0.125):
+    return torch.nn.functional.interpolate(x, scale_factor=scale, mode='bilinear')
+
+def setup(params):
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    #get data loader
+    valid_data_loader, valid_dataset = get_data_loader(params, params.inf_data_path, dist.is_initialized(), train=False)
+    img_shape_x = valid_dataset.img_shape_x
+    img_shape_y = valid_dataset.img_shape_y
+    params.img_shape_x = img_shape_x
+    params.img_shape_y = img_shape_y
+    if params.log_to_screen:
+      logging.info('Loading trained model checkpoint from {}'.format(params['best_checkpoint_path']))
+
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.in_channels)# for the backbone model, will be reset later
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)     
+    if params["orography"]:
+      params['N_in_channels'] = n_in_channels + 1
+    else:
+      params['N_in_channels'] = n_in_channels
+    params['N_out_channels'] = n_out_channels
+    params.means = np.load(params.global_means_path)[0, out_channels] # needed to standardize wind data
+    params.stds = np.load(params.global_stds_path)[0, out_channels]
+
+    # load wind model
+    if params.nettype_wind == 'afno':
+      model_wind = AFNONet(params).to(device) 
+    if 'model_wind_path' not in params:
+      raise Exception("no backbone model weights specified")
+    checkpoint_file  = params['model_wind_path']
+    model_wind = load_model(model_wind, params, checkpoint_file)
+    model_wind = model_wind.to(device)
+
+    # reset channels for precip
+    params['N_out_channels'] = len(params['out_channels'])
+    # load the model
+    if params.nettype == 'afno':
+      model = AFNONet(params).to(device) 
+    else:
+      raise Exception("not implemented")
+
+    model = PrecipNet(params, backbone=model).to(device)
+    checkpoint_file  = params['best_checkpoint_path']
+    model = load_model(model, params, checkpoint_file)
+    model = model.to(device)
+
+    # load the validation data
+    files_paths = glob.glob(params.inf_data_path + "/*.h5")
+    files_paths.sort()
+    # which year
+    yr = 0
+    if params.log_to_screen:
+        logging.info('Loading validation data')
+        logging.info('Validation data from {}'.format(files_paths[yr]))
+
+    valid_data_full = h5py.File(files_paths[yr], 'r')['fields']
+
+    # precip paths
+    path = params.precip + '/out_of_sample'
+    precip_paths = glob.glob(path + "/*.h5")
+    precip_paths.sort()
+    if params.log_to_screen:
+      logging.info('Loading validation precip data')
+      logging.info('Validation data from {}'.format(precip_paths[0]))
+    valid_data_tp_full = h5py.File(precip_paths[0], 'r')['tp']
+    return valid_data_full, valid_data_tp_full, model_wind, model
+
+
+def autoregressive_inference(params, ic, valid_data_full, valid_data_tp_full, model_wind, model):
+    ic = int(ic) 
+    #initialize global variables
+    device = torch.cuda.current_device() if torch.cuda.is_available() else 'cpu'
+    exp_dir = params['experiment_dir'] 
+    dt = int(params.dt)
+    prediction_length = int(params.prediction_length/dt)
+    n_history = params.n_history
+    img_shape_x = params.img_shape_x
+    img_shape_y = params.img_shape_y
+    in_channels = np.array(params.in_channels)
+    out_channels = np.array(params.out_channels)
+    n_in_channels = len(in_channels)
+    n_out_channels = len(out_channels)
+    means = params.means
+    stds = params.stds
+
+    #initialize memory for image sequences and RMSE/ACC, tqe for precip
+    valid_loss = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    acc = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    acc_unweighted = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+    tqe = torch.zeros((prediction_length, n_out_channels)).to(device, dtype=torch.float)
+ 
+    # wind seqs
+    seq_real = torch.zeros((prediction_length, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    seq_pred = torch.zeros((prediction_length, n_in_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    # precip sequences
+    seq_real_tp = torch.zeros((prediction_length, n_out_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+    seq_pred_tp = torch.zeros((prediction_length, n_out_channels, img_shape_x, img_shape_y)).to(device, dtype=torch.float)
+
+    valid_data = valid_data_full[ic:(ic+prediction_length*dt+n_history*dt):dt, in_channels, 0:720] #extract valid data from first year
+    # standardize
+    valid_data = (valid_data - means)/stds
+    valid_data = torch.as_tensor(valid_data).to(device, dtype=torch.float)
+
+    len_ic = prediction_length*dt
+    valid_data_tp = valid_data_tp_full[ic:(ic+prediction_length*dt):dt, 0:720].reshape(len_ic,n_out_channels,720,img_shape_y) #extract valid data from first year
+    # log normalize
+    eps = params.precip_eps
+    valid_data_tp = np.log1p(valid_data_tp/eps)
+    valid_data_tp = torch.as_tensor(valid_data_tp).to(device, dtype=torch.float)
+
+    m = torch.as_tensor(np.load(params.time_means_path_tp)[0][out_channels])[:, 0:img_shape_x] # climatology
+    m = torch.unsqueeze(m, 0)
+    m = m.to(device, dtype=torch.float)
+
+    std = torch.as_tensor(stds[:,0,0]).to(device, dtype=torch.float)
+
+    orography = params.orography
+    orography_path = params.orography_path
+    if orography:
+      orog = torch.as_tensor(np.expand_dims(np.expand_dims(h5py.File(orography_path, 'r')['orog'][0:720], axis = 0), axis = 0)).to(device, dtype = torch.float)
+      logging.info("orography loaded; shape:{}".format(orog.shape))
+
+    #autoregressive inference
+    if params.log_to_screen:
+      logging.info('Begin autoregressive inference')
+    
+    with torch.no_grad():
+      for i in range(valid_data.shape[0]): 
+        if i==0: #start of sequence
+          first = valid_data[0:n_history+1]
+          first_tp = valid_data_tp[0:1]
+          future = valid_data[n_history+1]
+          future_tp = valid_data_tp[1]
+          for h in range(n_history+1):
+            seq_real[h] = first[h*n_in_channels:(h+1)*n_in_channels][0:n_in_channels] #extract history from 1st 
+            seq_pred[h] = seq_real[h]
+          seq_real_tp[0] = unlog_tp_torch(first_tp)
+          seq_pred_tp[0] = unlog_tp_torch(first_tp)
+          if params.perturb:
+            first = gaussian_perturb(first, level=params.n_level, device=device) # perturb the ic
+          if orography:
+            future_pred = model_wind(torch.cat((first, orog), axis=1))
+          else:
+            future_pred = model_wind(first)
+          future_pred_tp = model(future_pred)
+        else:
+          if i < prediction_length-1:
+            future = valid_data[n_history+i+1]
+            future_tp = valid_data_tp[i+1]
+          if orography:
+            future_pred = model_wind(torch.cat((future_pred, orog), axis=1)) #autoregressive step
+          else:
+            future_pred = model_wind(future_pred) #autoregressive step
+          future_pred_tp = model(future_pred) # tp diagnosis
+
+        if i < prediction_length-1: #not on the last step
+          seq_pred[n_history+i+1] = future_pred
+          seq_real[n_history+i+1] = future
+          seq_pred_tp[i+1] = unlog_tp_torch(future_pred_tp) # this predicts 6-12 precip: 0 -> 6 (afno) -> 6-12 precip 
+          seq_real_tp[i+1] = unlog_tp_torch(future_tp) # which is the i+1th validation data
+          #collect history
+          history_stack = seq_pred[i+1:i+2+n_history]
+
+        # ic for next wind step
+        future_pred = history_stack
+      
+        pred = torch.unsqueeze(seq_pred_tp[i], 0)
+        tar = torch.unsqueeze(seq_real_tp[i], 0)
+        valid_loss[i] = weighted_rmse_torch_channels(pred, tar)
+        acc[i] = weighted_acc_torch_channels(pred-m, tar-m)
+        tqe[i] = top_quantiles_error_torch(pred, tar)
+        
+        if params.log_to_screen:
+          logging.info('Timestep {} of {}. TP RMS Error: {}, ACC: {}'.format((i), prediction_length, valid_loss[i,0], acc[i,0]))
+
+    seq_real_tp = seq_real_tp.cpu().numpy()
+    seq_pred_tp = seq_pred_tp.cpu().numpy()
+    valid_loss = valid_loss.cpu().numpy()
+    acc = acc.cpu().numpy()
+    acc_unweighted = acc_unweighted.cpu().numpy()
+    tqe = tqe.cpu().numpy()
+    return np.expand_dims(seq_real_tp, 0), np.expand_dims(seq_pred_tp, 0), np.expand_dims(valid_loss, 0), \
+           np.expand_dims(acc, 0), np.expand_dims(acc_unweighted, 0), np.expand_dims(tqe, 0)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--run_num", default='00', type=str)
+    parser.add_argument("--yaml_config", default='./config/AFNO.yaml', type=str)
+    parser.add_argument("--config", default='full_field', type=str)
+    parser.add_argument("--vis", action='store_true')
+    parser.add_argument("--override_dir", default=None, type = str, help = 'Path to store inference outputs; must also set --weights arg')
+    parser.add_argument("--weights", default=None, type=str, help = 'Path to model weights, for use with override_dir option')
+    
+    args = parser.parse_args()
+    params = YParams(os.path.abspath(args.yaml_config), args.config)
+    params['world_size'] = 1
+    params['global_batch_size'] = params.batch_size
+
+    torch.cuda.set_device(0)
+    torch.backends.cudnn.benchmark = True
+    vis = args.vis
+
+    # Set up directory
+    if args.override_dir is not None:
+      assert args.weights is not None, 'Must set --weights argument if using --override_dir'
+      expDir = args.override_dir
+    else:
+      assert args.weights is None, 'Cannot use --weights argument without also using --override_dir'
+      expDir = os.path.join(params.exp_dir, args.config, str(args.run_num))
+
+    if not os.path.isdir(expDir):
+      os.makedirs(expDir)
+
+    params['experiment_dir'] = os.path.abspath(expDir)
+    params['best_checkpoint_path'] = args.weights if args.override_dir is not None else os.path.join(expDir, 'training_checkpoints/best_ckpt.tar')
+    params['resuming'] = False
+    params['local_rank'] = 0
+
+    logging_utils.log_to_file(logger_name=None, log_filename=os.path.join(expDir, 'inference_out.log'))
+    logging_utils.log_versions()
+    params.log()
+
+    n_ics = params['n_initial_conditions']
+    ics = [1066, 1050, 1034]
+
+    n_samples_per_year = 1460
+
+    if params["ics_type"] == 'default':
+        num_samples = n_samples_per_year-params.prediction_length
+        stop = num_samples
+        ics = np.arange(0, stop, DECORRELATION_TIME)
+        if vis: # visualization for just the first ic (or any ic)
+            ics = [0]
+        n_ics = len(ics)
+    elif params["ics_type"] == "datetime":
+        date_strings = params["date_strings"]
+        ics = []
+        if params.perturb: #for perturbations use a single date and create n_ics perturbations
+            n_ics = params["n_perturbations"]
+            date = date_strings[0]
+            date_obj = datetime.strptime(date,'%Y-%m-%d %H:%M:%S') 
+            day_of_year = date_obj.timetuple().tm_yday - 1
+            hour_of_day = date_obj.timetuple().tm_hour
+            hours_since_jan_01_epoch = 24*day_of_year + hour_of_day
+            for ii in range(n_ics):
+                ics.append(int(hours_since_jan_01_epoch/6))
+        else:
+            for date in date_strings:
+                date_obj = datetime.strptime(date,'%Y-%m-%d %H:%M:%S') 
+                day_of_year = date_obj.timetuple().tm_yday - 1
+                hour_of_day = date_obj.timetuple().tm_hour
+                hours_since_jan_01_epoch = 24*day_of_year + hour_of_day
+                ics.append(int(hours_since_jan_01_epoch/6))
+        n_ics = len(ics)
+
+    logging.info("Inference for {} initial conditions".format(n_ics))
+    try:
+      autoregressive_inference_filetag = params["inference_file_tag"]
+    except:
+      autoregressive_inference_filetag = ""
+
+
+    autoregressive_inference_filetag += "_tp"
+    # get data and models
+    valid_data_full, valid_data_tp_full, model_wind, model = setup(params)
+
+    #initialize lists for image sequences and RMSE/ACC
+    valid_loss = np.zeros
+    acc_unweighted = []
+    acc = []
+    tqe = []
+    seq_pred = []
+    seq_real = []
+
+    #run autoregressive inference for multiple initial conditions
+    for i, ic in enumerate(ics):
+      t1 = time.time()
+      logging.info("Initial condition {} of {}".format(i+1, n_ics))
+      sr, sp, vl, a, au, tq = autoregressive_inference(params, ic, valid_data_full, valid_data_tp_full, model_wind, model)
+      if i == 0:
+        seq_real = sr
+        seq_pred = sp
+        valid_loss = vl
+        acc = a
+        acc_unweighted = au
+        tqe = tq
+      else:
+#        seq_real = np.concatenate((seq_real, sr), 0)
+#        seq_pred = np.concatenate((seq_pred, sp), 0)
+        valid_loss = np.concatenate((valid_loss, vl), 0)
+        acc = np.concatenate((acc, a), 0)
+        acc_unweighted = np.concatenate((acc_unweighted, au), 0)
+        tqe = np.concatenate((tqe, tq), 0)
+      t2 = time.time()-t1
+      print("time for 1 autoreg inference = ", t2)
+
+    prediction_length = seq_real[0].shape[0]
+    n_out_channels = seq_real[0].shape[1]
+    img_shape_x = seq_real[0].shape[2]
+    img_shape_y = seq_real[0].shape[3]
+
+    #save predictions and loss
+    if params.log_to_screen:
+      logging.info("Saving files at {}".format(os.path.join(params['experiment_dir'], 'autoregressive_predictions' + autoregressive_inference_filetag + '.h5')))
+    with h5py.File(os.path.join(params['experiment_dir'], 'autoregressive_predictions'+ autoregressive_inference_filetag +'.h5'), 'a') as f:
+      if vis:
+        try:
+          f.create_dataset("ground_truth", data = seq_real, shape = (n_ics, prediction_length, n_out_channels, img_shape_x, img_shape_y), dtype = np.float32)
+        except: 
+          del f["ground_truth"]
+          f.create_dataset("ground_truth", data = seq_real, shape = (n_ics, prediction_length, n_out_channels, img_shape_x, img_shape_y), dtype = np.float32)
+          f["ground_truth"][...] = seq_real
+
+        try:
+          f.create_dataset("predicted", data = seq_pred, shape = (n_ics, prediction_length, n_out_channels, img_shape_x, img_shape_y), dtype = np.float32)
+        except:
+          del f["predicted"]
+          f.create_dataset("predicted", data = seq_pred, shape = (n_ics, prediction_length, n_out_channels, img_shape_x, img_shape_y), dtype = np.float32)
+          f["predicted"][...]= seq_pred
+
+      try:
+        f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+      except:
+        del f["rmse"]
+        f.create_dataset("rmse", data = valid_loss, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f["rmse"][...] = valid_loss
+
+      try:
+        f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+      except:
+        del f["acc"]
+        f.create_dataset("acc", data = acc, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f["acc"][...] = acc   
+
+      try:
+        f.create_dataset("acc_unweighted", data = acc_unweighted, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+      except:
+        del f["acc_unweighted"]
+        f.create_dataset("acc_unweighted", data = acc_unweighted, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f["acc_unweighted"][...] = acc_unweighted     
+       
+      try:
+        f.create_dataset("tqe", data = tqe, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+      except:
+        del f["tqe"]
+        f.create_dataset("tqe", data = tqe, shape = (n_ics, prediction_length, n_out_channels), dtype =np.float32)
+        f["tqe"][...] = tqe
+
+      f.close() 

interactive_train.sh

+#!/bin/bash
+
+#shifter --image=nersc/pytorch:ngc-21.08-v1 --env PYTHONUSERBASE=/pscratch/home/jpathak/perlmutter/ngc-21.08-v1 python \
+#  train.py --enable_amp --config pretrained_two_step_afno_20ch_bs_64_lr1em4_blk_8_patch_8_cosine_sched --run_num test0 
+export MASTER_ADDR=$(hostname)
+image=nersc/pytorch:ngc-22.02-v0
+ngpu=4
+config_file=./config/AFNO.yaml
+config="afno_backbone"
+run_num="check"
+cmd="python train.py --enable_amp --yaml_config=$config_file --config=$config --run_num=$run_num"
+srun -n $ngpu --cpus-per-task=32 --gpus-per-node $ngpu shifter --image=${image} bash -c "source export_DDP_vars.sh && $cmd"

networks/afnonet.py

+#reference: https://github.com/NVlabs/AFNO-transformer
+
+import math
+from functools import partial
+from collections import OrderedDict
+from copy import Error, deepcopy
+from re import S
+from numpy.lib.arraypad import pad
+import numpy as np
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+#from timm.data import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD
+from timm.models.layers import DropPath, trunc_normal_
+import torch.fft
+from torch.nn.modules.container import Sequential
+from torch.utils.checkpoint import checkpoint_sequential
+from einops import rearrange, repeat
+from einops.layers.torch import Rearrange
+from utils.img_utils import PeriodicPad2d
+
+
+class Mlp(nn.Module):
+    def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
+        super().__init__()
+        out_features = out_features or in_features
+        hidden_features = hidden_features or in_features
+        self.fc1 = nn.Linear(in_features, hidden_features)
+        self.act = act_layer()
+        self.fc2 = nn.Linear(hidden_features, out_features)
+        self.drop = nn.Dropout(drop)
+
+    def forward(self, x):
+        x = self.fc1(x)
+        x = self.act(x)
+        x = self.drop(x)
+        x = self.fc2(x)
+        x = self.drop(x)
+        return x
+
+
+class AFNO2D(nn.Module):
+    def __init__(self, hidden_size, num_blocks=8, sparsity_threshold=0.01, hard_thresholding_fraction=1, hidden_size_factor=1):
+        super().__init__()
+        assert hidden_size % num_blocks == 0, f"hidden_size {hidden_size} should be divisble by num_blocks {num_blocks}"
+
+        self.hidden_size = hidden_size
+        self.sparsity_threshold = sparsity_threshold
+        self.num_blocks = num_blocks
+        self.block_size = self.hidden_size // self.num_blocks
+        self.hard_thresholding_fraction = hard_thresholding_fraction
+        self.hidden_size_factor = hidden_size_factor
+        self.scale = 0.02
+
+        self.w1 = nn.Parameter(self.scale * torch.randn(2, self.num_blocks, self.block_size, self.block_size * self.hidden_size_factor))
+        self.b1 = nn.Parameter(self.scale * torch.randn(2, self.num_blocks, self.block_size * self.hidden_size_factor))
+        self.w2 = nn.Parameter(self.scale * torch.randn(2, self.num_blocks, self.block_size * self.hidden_size_factor, self.block_size))
+        self.b2 = nn.Parameter(self.scale * torch.randn(2, self.num_blocks, self.block_size))
+
+    def forward(self, x):
+        bias = x
+
+        dtype = x.dtype
+        x = x.float()
+        B, H, W, C = x.shape
+
+        x = torch.fft.rfft2(x, dim=(1, 2), norm="ortho")
+        x = x.reshape(B, H, W // 2 + 1, self.num_blocks, self.block_size)
+
+        o1_real = torch.zeros([B, H, W // 2 + 1, self.num_blocks, self.block_size * self.hidden_size_factor], device=x.device)
+        o1_imag = torch.zeros([B, H, W // 2 + 1, self.num_blocks, self.block_size * self.hidden_size_factor], device=x.device)
+        o2_real = torch.zeros(x.shape, device=x.device)
+        o2_imag = torch.zeros(x.shape, device=x.device)
+
+
+        total_modes = H // 2 + 1
+        kept_modes = int(total_modes * self.hard_thresholding_fraction)
+
+        o1_real[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes] = F.relu(
+            torch.einsum('...bi,bio->...bo', x[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes].real, self.w1[0]) - \
+            torch.einsum('...bi,bio->...bo', x[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes].imag, self.w1[1]) + \
+            self.b1[0]
+        )
+
+        o1_imag[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes] = F.relu(
+            torch.einsum('...bi,bio->...bo', x[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes].imag, self.w1[0]) + \
+            torch.einsum('...bi,bio->...bo', x[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes].real, self.w1[1]) + \
+            self.b1[1]
+        )
+
+        o2_real[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes]  = (
+            torch.einsum('...bi,bio->...bo', o1_real[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes], self.w2[0]) - \
+            torch.einsum('...bi,bio->...bo', o1_imag[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes], self.w2[1]) + \
+            self.b2[0]
+        )
+
+        o2_imag[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes]  = (
+            torch.einsum('...bi,bio->...bo', o1_imag[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes], self.w2[0]) + \
+            torch.einsum('...bi,bio->...bo', o1_real[:, total_modes-kept_modes:total_modes+kept_modes, :kept_modes], self.w2[1]) + \
+            self.b2[1]
+        )
+
+        x = torch.stack([o2_real, o2_imag], dim=-1)
+        x = F.softshrink(x, lambd=self.sparsity_threshold)
+        x = torch.view_as_complex(x)
+        x = x.reshape(B, H, W // 2 + 1, C)
+        x = torch.fft.irfft2(x, s=(H, W), dim=(1,2), norm="ortho")
+        x = x.type(dtype)
+
+        return x + bias
+
+
+class Block(nn.Module):
+    def __init__(
+            self,
+            dim,
+            mlp_ratio=4.,
+            drop=0.,
+            drop_path=0.,
+            act_layer=nn.GELU,
+            norm_layer=nn.LayerNorm,
+            double_skip=True,
+            num_blocks=8,
+            sparsity_threshold=0.01,
+            hard_thresholding_fraction=1.0
+        ):
+        super().__init__()
+        self.norm1 = norm_layer(dim)
+        self.filter = AFNO2D(dim, num_blocks, sparsity_threshold, hard_thresholding_fraction) 
+        self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
+        #self.drop_path = nn.Identity()
+        self.norm2 = norm_layer(dim)
+        mlp_hidden_dim = int(dim * mlp_ratio)
+        self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
+        self.double_skip = double_skip
+
+    def forward(self, x):
+        residual = x
+        x = self.norm1(x)
+        x = self.filter(x)
+
+        if self.double_skip:
+            x = x + residual
+            residual = x
+
+        x = self.norm2(x)
+        x = self.mlp(x)
+        x = self.drop_path(x)
+        x = x + residual
+        return x
+
+class PrecipNet(nn.Module):
+    def __init__(self, params, backbone):
+        super().__init__()
+        self.params = params
+        self.patch_size = (params.patch_size, params.patch_size)
+        self.in_chans = params.N_in_channels
+        self.out_chans = params.N_out_channels
+        self.backbone = backbone
+        self.ppad = PeriodicPad2d(1)
+        self.conv = nn.Conv2d(self.out_chans, self.out_chans, kernel_size=3, stride=1, padding=0, bias=True)
+        self.act = nn.ReLU()
+
+    def forward(self, x):
+        x = self.backbone(x)
+        x = self.ppad(x)
+        x = self.conv(x)
+        x = self.act(x)
+        return x
+
+class AFNONet(nn.Module):
+    def __init__(
+            self,
+            params,
+            img_size=(720, 1440),
+            patch_size=(16, 16),
+            in_chans=2,
+            out_chans=2,
+            embed_dim=768,
+            depth=12,
+            mlp_ratio=4.,
+            drop_rate=0.,
+            drop_path_rate=0.,
+            num_blocks=16,
+            sparsity_threshold=0.01,
+            hard_thresholding_fraction=1.0,
+        ):
+        super().__init__()
+        self.params = params
+        self.img_size = img_size
+        self.patch_size = (params.patch_size, params.patch_size)
+        self.in_chans = params.N_in_channels
+        self.out_chans = params.N_out_channels
+        self.num_features = self.embed_dim = embed_dim
+        self.num_blocks = params.num_blocks 
+        norm_layer = partial(nn.LayerNorm, eps=1e-6)
+
+        self.patch_embed = PatchEmbed(img_size=img_size, patch_size=self.patch_size, in_chans=self.in_chans, embed_dim=embed_dim)
+        num_patches = self.patch_embed.num_patches
+
+        self.pos_embed = nn.Parameter(torch.zeros(1, num_patches, embed_dim))
+        self.pos_drop = nn.Dropout(p=drop_rate)
+
+        dpr = [x.item() for x in torch.linspace(0, drop_path_rate, depth)]
+
+        self.h = img_size[0] // self.patch_size[0]
+        self.w = img_size[1] // self.patch_size[1]
+
+        self.blocks = nn.ModuleList([
+            Block(dim=embed_dim, mlp_ratio=mlp_ratio, drop=drop_rate, drop_path=dpr[i], norm_layer=norm_layer,
+            num_blocks=self.num_blocks, sparsity_threshold=sparsity_threshold, hard_thresholding_fraction=hard_thresholding_fraction) 
+        for i in range(depth)])
+
+        self.norm = norm_layer(embed_dim)
+
+        self.head = nn.Linear(embed_dim, self.out_chans*self.patch_size[0]*self.patch_size[1], bias=False)
+
+        trunc_normal_(self.pos_embed, std=.02)
+        self.apply(self._init_weights)
+
+    def _init_weights(self, m):
+        if isinstance(m, nn.Linear):
+            trunc_normal_(m.weight, std=.02)
+            if isinstance(m, nn.Linear) and m.bias is not None:
+                nn.init.constant_(m.bias, 0)
+        elif isinstance(m, nn.LayerNorm):
+            nn.init.constant_(m.bias, 0)
+            nn.init.constant_(m.weight, 1.0)
+
+    @torch.jit.ignore
+    def no_weight_decay(self):
+        return {'pos_embed', 'cls_token'}
+
+    def forward_features(self, x):
+        B = x.shape[0]
+        x = self.patch_embed(x)
+        x = x + self.pos_embed
+        x = self.pos_drop(x)
+        
+        x = x.reshape(B, self.h, self.w, self.embed_dim)
+        for blk in self.blocks:
+            x = blk(x)
+
+        return x
+
+    def forward(self, x):
+        x = self.forward_features(x)
+        x = self.head(x)
+        x = rearrange(
+            x,
+            "b h w (p1 p2 c_out) -> b c_out (h p1) (w p2)",
+            p1=self.patch_size[0],
+            p2=self.patch_size[1],
+            h=self.img_size[0] // self.patch_size[0],
+            w=self.img_size[1] // self.patch_size[1],
+        )
+        return x
+
+
+class PatchEmbed(nn.Module):
+    def __init__(self, img_size=(224, 224), patch_size=(16, 16), in_chans=3, embed_dim=768):
+        super().__init__()
+        num_patches = (img_size[1] // patch_size[1]) * (img_size[0] // patch_size[0])
+        self.img_size = img_size
+        self.patch_size = patch_size
+        self.num_patches = num_patches
+        self.proj = nn.Conv2d(in_chans, embed_dim, kernel_size=patch_size, stride=patch_size)
+
+    def forward(self, x):
+        B, C, H, W = x.shape
+        assert H == self.img_size[0] and W == self.img_size[1], f"Input image size ({H}*{W}) doesn't match model ({self.img_size[0]}*{self.img_size[1]})."
+        x = self.proj(x).flatten(2).transpose(1, 2)
+        return x
+
+
+if __name__ == "__main__":
+    model = AFNONet(img_size=(720, 1440), patch_size=(4,4), in_chans=3, out_chans=10)
+    sample = torch.randn(1, 3, 720, 1440)
+    result = model(sample)
+    print(result.shape)
+    print(torch.norm(result))
+

push.sh

+# 1. 重新初始化，排除大文件
+cd /workspace/FourCastNet
+rm -rf .git
+
+# 2. 创建 .gitignore 排除数据文件
+cat > .gitignore << 'EOF'
+data.tar.gz
+data/
+*.tar.gz
+*.zip
+EOF
+
+# 3. 重新初始化 Git
+git init
+git add .
+git commit -m "Initial commit: FourCastNet code only"
+
+# 4. 强制推送（这次应该成功）
+git remote add origin http://developer.sourcefind.cn/codes/bw_bestperf/fourcastnet_train.git
+git push -f origin master

run.sh

+rm -rf ./exp
+export HIP_MODULE_LOADING=EAGER
+export HIP_ALLOC_INITIALIZE=0
+export HIP_REUSE_MODULE=1
+export HIP_VISIBLE_DEVICES=0
+config_file=./config/AFNO-50epoch.yaml
+config='afno_backbone'
+run_num='check_exp'
+export HDF5_USE_FILE_LOCKING=FALSE
+python train.py --enable_amp --yaml_config=$config_file --config=$config --run_num=$run_num
+

submit_batch.sh

+#!/bin/bash -l
+#SBATCH --time=06:00:00
+#SBATCH -C gpu
+#SBATCH --account=m4134_g
+#SBATCH --nodes=16
+#SBATCH --ntasks-per-node=4
+#SBATCH --gpus-per-node=4
+#SBATCH --cpus-per-task=32
+#SBATCH -J afno
+#SBATCH --image=nersc/pytorch:ngc-22.02-v0
+#SBATCH -o afno_backbone_finetune.out
+
+config_file=./config/AFNO.yaml
+config='afno_backbone_finetune'
+run_num='0'
+
+export HDF5_USE_FILE_LOCKING=FALSE
+export NCCL_NET_GDR_LEVEL=PHB
+
+export MASTER_ADDR=$(hostname)
+
+set -x
+srun -u --mpi=pmi2 shifter \
+    bash -c "
+    source export_DDP_vars.sh
+    python train.py --enable_amp --yaml_config=$config_file --config=$config --run_num=$run_num
+    "

submit_batch_ensemble.sh

+#!/bin/bash
+#SBATCH --time=00:15:00
+#SBATCH -N 4
+#SBATCH --ntasks-per-node=4
+#SBATCH --gpus-per-node=4
+#SBATCH --cpus-per-task=32
+#SBATCH -C gpu
+#SBATCH --account=m4134_g
+#SBATCH -q regular
+#SBATCH --image=nersc/pytorch:ngc-22.02-v0
+
+export HDF5_USE_FILE_LOCKING=FALSE
+export MASTER_ADDR=$(hostname)
+
+launch="python inference/inference_ensemble.py --config=afno_backbone_finetune --run_num=0 --n_level=0.3"
+#launch="python inference/inference_ensemble_precip.py --config=precip --run_num=1 --n_level=0.1"
+
+srun --mpi=pmi2 -u -l shifter --module gpu --env PYTHONUSERBASE=$HOME/.local/perlmutter/nersc-pytorch-22.02-v0 bash -c "
+    source export_DDP_vars.sh
+    $launch
+    "
+

utils/YParams.py

+from ruamel.yaml import YAML
+import logging
+
+class YParams():
+  """ Yaml file parser """
+  def __init__(self, yaml_filename, config_name, print_params=False):
+    self._yaml_filename = yaml_filename
+    self._config_name = config_name
+    self.params = {}
+
+    if print_params:
+      print("------------------ Configuration ------------------")
+
+    with open(yaml_filename) as _file:
+
+      for key, val in YAML().load(_file)[config_name].items():
+        if print_params: print(key, val)
+        if val =='None': val = None
+
+        self.params[key] = val
+        self.__setattr__(key, val)
+
+    if print_params:
+      print("---------------------------------------------------")
+
+  def __getitem__(self, key):
+    return self.params[key]
+
+  def __setitem__(self, key, val):
+    self.params[key] = val
+    self.__setattr__(key, val)
+
+  def __contains__(self, key):
+    return (key in self.params)
+
+  def update_params(self, config):
+    for key, val in config.items():
+      self.params[key] = val
+      self.__setattr__(key, val)
+
+  def log(self):
+    logging.info("------------------ Configuration ------------------")
+    logging.info("Configuration file: "+str(self._yaml_filename))
+    logging.info("Configuration name: "+str(self._config_name))
+    for key, val in self.params.items():
+        logging.info(str(key) + ' ' + str(val))
+    logging.info("---------------------------------------------------")

utils/darcy_loss.py

+#MIT License
+#
+#Copyright (c) 2020 Zongyi Li
+#
+#Permission is hereby granted, free of charge, to any person obtaining a copy
+#of this software and associated documentation files (the "Software"), to deal
+#in the Software without restriction, including without limitation the rights
+#to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+#copies of the Software, and to permit persons to whom the Software is
+#furnished to do so, subject to the following conditions:
+#
+#The above copyright notice and this permission notice shall be included in all
+#copies or substantial portions of the Software.
+#
+#THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+#IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+#FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+#AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+#LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+#OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+#SOFTWARE.
+
+import torch
+import numpy as np
+import scipy.io
+import h5py
+import torch.nn as nn
+
+
+#################################################
+#
+# Utilities
+#
+#################################################
+device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
+
+# reading data
+class MatReader(object):
+    def __init__(self, file_path, to_torch=True, to_cuda=False, to_float=True):
+        super(MatReader, self).__init__()
+
+        self.to_torch = to_torch
+        self.to_cuda = to_cuda
+        self.to_float = to_float
+
+        self.file_path = file_path
+
+        self.data = None
+        self.old_mat = None
+        self._load_file()
+
+    def _load_file(self):
+        try:
+            self.data = scipy.io.loadmat(self.file_path)
+            self.old_mat = True
+        except:
+            self.data = h5py.File(self.file_path)
+            self.old_mat = False
+
+    def load_file(self, file_path):
+        self.file_path = file_path
+        self._load_file()
+
+    def read_field(self, field):
+        x = self.data[field]
+
+        if not self.old_mat:
+            x = x[()]
+            x = np.transpose(x, axes=range(len(x.shape) - 1, -1, -1))
+
+        if self.to_float:
+            x = x.astype(np.float32)
+
+        if self.to_torch:
+            x = torch.from_numpy(x)
+
+            if self.to_cuda:
+                x = x.cuda()
+
+        return x
+
+    def set_cuda(self, to_cuda):
+        self.to_cuda = to_cuda
+
+    def set_torch(self, to_torch):
+        self.to_torch = to_torch
+
+    def set_float(self, to_float):
+        self.to_float = to_float
+
+# normalization, pointwise gaussian
+class UnitGaussianNormalizer(object):
+    def __init__(self, x, eps=0.00001):
+        super(UnitGaussianNormalizer, self).__init__()
+
+        # x could be in shape of ntrain*n or ntrain*T*n or ntrain*n*T
+        self.mean = torch.mean(x, 0)
+        self.std = torch.std(x, 0)
+        self.eps = eps
+
+    def encode(self, x):
+        x = (x - self.mean) / (self.std + self.eps)
+        return x.float()
+
+    def decode(self, x, sample_idx=None):
+        if sample_idx is None:
+            std = self.std + self.eps # n
+            mean = self.mean
+        else:
+            if len(self.mean.shape) == len(sample_idx[0].shape):
+                std = self.std[sample_idx] + self.eps  # batch*n
+                mean = self.mean[sample_idx]
+            if len(self.mean.shape) > len(sample_idx[0].shape):
+                std = self.std[:,sample_idx]+ self.eps # T*batch*n
+                mean = self.mean[:,sample_idx]
+
+        # x is in shape of batch*n or T*batch*n
+        x = (x * std) + mean
+        return x.float()
+
+    def cuda(self):
+        self.mean = self.mean.cuda()
+        self.std = self.std.cuda()
+
+    def cpu(self):
+        self.mean = self.mean.cpu()
+        self.std = self.std.cpu()
+
+# normalization, Gaussian
+class GaussianNormalizer(object):
+    def __init__(self, x, eps=0.00001):
+        super(GaussianNormalizer, self).__init__()
+
+        self.mean = torch.mean(x)
+        self.std = torch.std(x)
+        self.eps = eps
+
+    def encode(self, x):
+        x = (x - self.mean) / (self.std + self.eps)
+        return x
+
+    def decode(self, x, sample_idx=None):
+        x = (x * (self.std + self.eps)) + self.mean
+        return x
+
+    def cuda(self):
+        self.mean = self.mean.cuda()
+        self.std = self.std.cuda()
+
+    def cpu(self):
+        self.mean = self.mean.cpu()
+        self.std = self.std.cpu()
+
+
+# normalization, scaling by range
+class RangeNormalizer(object):
+    def __init__(self, x, low=0.0, high=1.0):
+        super(RangeNormalizer, self).__init__()
+        mymin = torch.min(x, 0)[0].view(-1)
+        mymax = torch.max(x, 0)[0].view(-1)
+
+        self.a = (high - low)/(mymax - mymin)
+        self.b = -self.a*mymax + high
+
+    def encode(self, x):
+        s = x.size()
+        x = x.view(s[0], -1)
+        x = self.a*x + self.b
+        x = x.view(s)
+        return x
+
+    def decode(self, x):
+        s = x.size()
+        x = x.view(s[0], -1)
+        x = (x - self.b)/self.a
+        x = x.view(s)
+        return x
+
+#loss function with rel/abs Lp loss
+class LpLoss(object):
+    def __init__(self, d=2, p=2, size_average=True, reduction=True):
+        super(LpLoss, self).__init__()
+
+        #Dimension and Lp-norm type are postive
+        assert d > 0 and p > 0
+
+        self.d = d
+        self.p = p
+        self.reduction = reduction
+        self.size_average = size_average
+
+    def abs(self, x, y):
+        num_examples = x.size()[0]
+
+        #Assume uniform mesh
+        h = 1.0 / (x.size()[1] - 1.0)
+
+        all_norms = (h**(self.d/self.p))*torch.norm(x.view(num_examples,-1) - y.view(num_examples,-1), self.p, 1)
+
+        if self.reduction:
+            if self.size_average:
+                return torch.mean(all_norms)
+            else:
+                return torch.sum(all_norms)
+
+        return all_norms
+
+    def rel(self, x, y):
+        num_examples = x.size()[0]
+
+        diff_norms = torch.norm(x.reshape(num_examples,-1) - y.reshape(num_examples,-1), self.p, 1)
+        y_norms = torch.norm(y.reshape(num_examples,-1), self.p, 1)
+
+        if self.reduction:
+            if self.size_average:
+                return torch.mean(diff_norms/y_norms)
+            else:
+                return torch.sum(diff_norms/y_norms)
+
+        return diff_norms/y_norms
+
+    def __call__(self, x, y):
+        return self.rel(x, y)
+
+# Sobolev norm (HS norm)
+# where we also compare the numerical derivatives between the output and target
+class HsLoss(object):
+    def __init__(self, d=2, p=2, k=1, a=None, group=False, size_average=True, reduction=True):
+        super(HsLoss, self).__init__()
+
+        #Dimension and Lp-norm type are postive
+        assert d > 0 and p > 0
+
+        self.d = d
+        self.p = p
+        self.k = k
+        self.balanced = group
+        self.reduction = reduction
+        self.size_average = size_average
+
+        if a == None:
+            a = [1,] * k
+        self.a = a
+
+    def rel(self, x, y):
+        num_examples = x.size()[0]
+        diff_norms = torch.norm(x.reshape(num_examples,-1) - y.reshape(num_examples,-1), self.p, 1)
+        y_norms = torch.norm(y.reshape(num_examples,-1), self.p, 1)
+        if self.reduction:
+            if self.size_average:
+                return torch.mean(diff_norms/y_norms)
+            else:
+                return torch.sum(diff_norms/y_norms)
+        return diff_norms/y_norms
+
+    def __call__(self, x, y, a=None):
+        nx = x.size()[1]
+        ny = x.size()[2]
+        k = self.k
+        balanced = self.balanced
+        a = self.a
+        x = x.view(x.shape[0], nx, ny, -1)
+        y = y.view(y.shape[0], nx, ny, -1)
+
+        k_x = torch.cat((torch.arange(start=0, end=nx//2, step=1),torch.arange(start=-nx//2, end=0, step=1)), 0).reshape(nx,1).repeat(1,ny)
+        k_y = torch.cat((torch.arange(start=0, end=ny//2, step=1),torch.arange(start=-ny//2, end=0, step=1)), 0).reshape(1,ny).repeat(nx,1)
+        k_x = torch.abs(k_x).reshape(1,nx,ny,1).to(x.device)
+        k_y = torch.abs(k_y).reshape(1,nx,ny,1).to(x.device)
+
+        x = torch.fft.fftn(x, dim=[1, 2])
+        y = torch.fft.fftn(y, dim=[1, 2])
+
+        if balanced==False:
+            weight = 1
+            if k >= 1:
+                weight += a[0]**2 * (k_x**2 + k_y**2)
+            if k >= 2:
+                weight += a[1]**2 * (k_x**4 + 2*k_x**2*k_y**2 + k_y**4)
+            weight = torch.sqrt(weight)
+            loss = self.rel(x*weight, y*weight)
+        else:
+            loss = self.rel(x, y)
+            if k >= 1:
+                weight = a[0] * torch.sqrt(k_x**2 + k_y**2)
+                loss += self.rel(x*weight, y*weight)
+            if k >= 2:
+                weight = a[1] * torch.sqrt(k_x**4 + 2*k_x**2*k_y**2 + k_y**4)
+                loss += self.rel(x*weight, y*weight)
+            loss = loss / (k+1)
+
+        return loss
+
+# A simple feedforward neural network
+class DenseNet(torch.nn.Module):
+    def __init__(self, layers, nonlinearity, out_nonlinearity=None, normalize=False):
+        super(DenseNet, self).__init__()
+
+        self.n_layers = len(layers) - 1
+
+        assert self.n_layers >= 1
+
+        self.layers = nn.ModuleList()
+
+        for j in range(self.n_layers):
+            self.layers.append(nn.Linear(layers[j], layers[j+1]))
+
+            if j != self.n_layers - 1:
+                if normalize:
+                    self.layers.append(nn.BatchNorm1d(layers[j+1]))
+
+                self.layers.append(nonlinearity())
+
+        if out_nonlinearity is not None:
+            self.layers.append(out_nonlinearity())
+
+    def forward(self, x):
+        for _, l in enumerate(self.layers):
+            x = l(x)
+
+        return x