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[Core][Metrics][BugFix] Replace num_cached_tokens/num_external_computed_tokens with PrefillStats (#37460)

Related to `Counters can only be incremented by non-negative amounts`
error with the `vllm:prompt_tokens_by_source_total` metric.
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[Performance Improvement] Update `batched_count_greater_than` to handle batch size 1 without recompile (#38933)
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