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OpenDAS
torchani
Commits
3af8c49e
Commit
3af8c49e
authored
Nov 07, 2019
by
Gao, Xiang
Committed by
Farhad Ramezanghorbani
Nov 07, 2019
Browse files
Use @ syntax (#371)
parent
ffb075e6
Changes
1
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torchani/aev.py
torchani/aev.py
+2
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torchani/aev.py
View file @
3af8c49e
...
...
@@ -149,7 +149,7 @@ def neighbor_pairs(padding_mask, coordinates, cell, shifts, cutoff):
shifts_all
=
torch
.
cat
([
shifts_center
,
shifts_outide
])
p1_all
=
torch
.
cat
([
p1_center
,
p1
])
p2_all
=
torch
.
cat
([
p2_center
,
p2
])
shift_values
=
torch
.
mm
(
shifts_all
.
to
(
cell
.
dtype
)
,
cell
)
shift_values
=
shifts_all
.
to
(
cell
.
dtype
)
@
cell
# step 5, compute distances, and find all pairs within cutoff
distances
=
(
coordinates
.
index_select
(
1
,
p1_all
)
-
coordinates
.
index_select
(
1
,
p2_all
)
+
shift_values
).
norm
(
2
,
-
1
)
...
...
@@ -241,7 +241,7 @@ def compute_aev(species, coordinates, cell, shifts, triu_index, constants, sizes
coordinates
=
coordinates
.
flatten
(
0
,
1
)
species1
=
species
[
atom_index1
]
species2
=
species
[
atom_index2
]
shift_values
=
torch
.
mm
(
shifts
.
to
(
cell
.
dtype
)
,
cell
)
shift_values
=
shifts
.
to
(
cell
.
dtype
)
@
cell
vec
=
coordinates
.
index_select
(
0
,
atom_index1
)
-
coordinates
.
index_select
(
0
,
atom_index2
)
+
shift_values
distances
=
vec
.
norm
(
2
,
-
1
)
...
...
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