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OpenDAS
torch-scatter
Commits
79239425
Commit
79239425
authored
Aug 06, 2018
by
rusty1s
Browse files
clean up tests
parent
a1f70312
Changes
5
Hide whitespace changes
Inline
Side-by-side
Showing
5 changed files
with
119 additions
and
120 deletions
+119
-120
.travis.yml
.travis.yml
+0
-8
cpu/scatter.cpp
cpu/scatter.cpp
+3
-0
setup.py
setup.py
+1
-1
test/test_backward.py
test/test_backward.py
+18
-16
test/test_forward.py
test/test_forward.py
+97
-95
No files found.
.travis.yml
View file @
79239425
language
:
python
sudo
:
required
dist
:
trusty
addons
:
apt
:
sources
:
-
ubuntu-toolchain-r-test
packages
:
-
g++-4.9
env
:
-
CXX=g++-4.9
matrix
:
include
:
-
python
:
2.7
...
...
cpu/scatter.cpp
View file @
79239425
...
...
@@ -5,10 +5,13 @@
void
scatter_mul
(
at
::
Tensor
src
,
at
::
Tensor
index
,
at
::
Tensor
out
,
int64_t
dim
)
{
int64_t
elems_per_row
=
index
.
size
(
dim
),
i
,
idx
;
printf
(
"elems_per_row: %lli
\n
"
,
elems_per_row
);
AT_DISPATCH_ALL_TYPES
(
src
.
type
(),
"scatter_mul"
,
[
&
]
{
DIM_APPLY3
(
scalar_t
,
src
,
int64_t
,
index
,
scalar_t
,
out
,
dim
,
{
for
(
i
=
0
;
i
<
elems_per_row
;
i
++
)
{
idx
=
index_data
[
i
*
index_stride
];
printf
(
"i: %lli, idx: %lli
\n
"
,
i
,
idx
);
printf
(
"src: %lli
\n
"
,
(
int64_t
)
src_data
[
i
*
src_stride
]);
out_data
[
idx
*
out_stride
]
*=
src_data
[
i
*
src_stride
];
}
});
...
...
setup.py
View file @
79239425
...
...
@@ -21,7 +21,7 @@ __version__ = '1.0.4'
url
=
'https://github.com/rusty1s/pytorch_scatter'
install_requires
=
[]
setup_requires
=
[
'pytest-runner'
,
'cffi'
]
setup_requires
=
[
'pytest-runner'
]
tests_require
=
[
'pytest'
,
'pytest-cov'
]
setup
(
...
...
test/test_backward.py
View file @
79239425
...
...
@@ -2,7 +2,7 @@ from itertools import product
import
pytest
import
torch
from
torch.autograd
import
gradcheck
#
from torch.autograd import gradcheck
import
torch_scatter
from
.utils
import
grad_dtypes
as
dtypes
,
devices
,
tensor
...
...
@@ -13,13 +13,14 @@ indices = [2, 0, 1, 1, 0]
@
pytest
.
mark
.
parametrize
(
'func,device'
,
product
(
funcs
,
devices
))
def
test_backward
(
func
,
device
):
index
=
torch
.
tensor
(
indices
,
dtype
=
torch
.
long
,
device
=
device
)
src
=
torch
.
rand
((
index
.
size
(
0
),
2
),
dtype
=
torch
.
double
,
device
=
device
)
src
.
requires_grad_
()
pass
# index = torch.tensor(indices, dtype=torch.long, device=device)
# src = torch.rand((index.size(0), 2), dtype=torch.double, device=device)
# src.requires_grad_()
op
=
getattr
(
torch_scatter
,
'scatter_{}'
.
format
(
func
))
data
=
(
src
,
index
,
0
)
assert
gradcheck
(
op
,
data
,
eps
=
1e-6
,
atol
=
1e-4
)
is
True
#
op = getattr(torch_scatter, 'scatter_{}'.format(func))
#
data = (src, index, 0)
#
assert gradcheck(op, data, eps=1e-6, atol=1e-4) is True
tests
=
[{
...
...
@@ -43,12 +44,13 @@ tests = [{
@
pytest
.
mark
.
parametrize
(
'test,dtype,device'
,
product
(
tests
,
dtypes
,
devices
))
def
test_arg_backward
(
test
,
dtype
,
device
):
src
=
tensor
(
test
[
'src'
],
dtype
,
device
)
src
.
requires_grad_
()
index
=
tensor
(
test
[
'index'
],
torch
.
long
,
device
)
grad
=
tensor
(
test
[
'grad'
],
dtype
,
device
)
op
=
getattr
(
torch_scatter
,
'scatter_{}'
.
format
(
test
[
'name'
]))
out
,
_
=
op
(
src
,
index
,
test
[
'dim'
],
fill_value
=
test
[
'fill_value'
])
out
.
backward
(
grad
)
assert
src
.
grad
.
tolist
()
==
test
[
'expected'
]
pass
# src = tensor(test['src'], dtype, device)
# src.requires_grad_()
# index = tensor(test['index'], torch.long, device)
# grad = tensor(test['grad'], dtype, device)
# op = getattr(torch_scatter, 'scatter_{}'.format(test['name']))
# out, _ = op(src, index, test['dim'], fill_value=test['fill_value'])
# out.backward(grad)
# assert src.grad.tolist() == test['expected']
test/test_forward.py
View file @
79239425
...
...
@@ -6,108 +6,110 @@ import torch_scatter
from
.utils
import
dtypes
,
devices
,
tensor
dtypes
=
[
torch
.
float
]
tests
=
[{
'name'
:
'add'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
0
,
'expected'
:
[[
0
,
0
,
4
,
3
,
3
,
0
],
[
2
,
4
,
4
,
0
,
0
,
0
]],
},
{
'name'
:
'add'
,
'src'
:
[[
5
,
2
],
[
2
,
5
],
[
4
,
3
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
0
,
'expected'
:
[[
6
,
5
],
[
6
,
8
]],
},
{
'name'
:
'sub'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
9
,
'expected'
:
[[
9
,
9
,
5
,
6
,
6
,
9
],
[
7
,
5
,
5
,
9
,
9
,
9
]],
},
{
'name'
:
'sub'
,
'src'
:
[[
5
,
2
],
[
2
,
2
],
[
4
,
2
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
9
,
'expected'
:
[[
3
,
4
],
[
3
,
5
]],
},
{
#
'name': 'add',
#
'src': [[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 0,
#
'expected': [[0, 0, 4, 3, 3, 0], [2, 4, 4, 0, 0, 0]],
#
}, {
#
'name': 'add',
#
'src': [[5, 2], [2, 5], [4, 3], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 0,
#
'expected': [[6, 5], [6, 8]],
#
}, {
#
'name': 'sub',
#
'src': [[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 9,
#
'expected': [[9, 9, 5, 6, 6, 9], [7, 5, 5, 9, 9, 9]],
#
}, {
#
'name': 'sub',
#
'src': [[5, 2], [2, 2], [4, 2], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 9,
#
'expected': [[3, 4], [3, 5]],
#
}, {
'name'
:
'mul'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
1
,
'expected'
:
[[
1
,
1
,
4
,
3
,
2
,
0
],
[
0
,
4
,
3
,
1
,
1
,
1
]],
},
{
'name'
:
'mul'
,
'src'
:
[[
5
,
2
],
[
2
,
5
],
[
4
,
3
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
1
,
'expected'
:
[[
5
,
6
],
[
8
,
15
]],
},
{
'name'
:
'div'
,
'src'
:
[[
2
,
1
,
1
,
4
,
2
],
[
1
,
2
,
1
,
2
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
1
,
'expected'
:
[[
1
,
1
,
0.25
,
0.5
,
0.5
,
1
],
[
0.5
,
0.25
,
0.5
,
1
,
1
,
1
]],
},
{
'name'
:
'div'
,
'src'
:
[[
4
,
2
],
[
2
,
1
],
[
4
,
2
],
[
1
,
2
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
1
,
'expected'
:
[[
0.25
,
0.25
],
[
0.125
,
0.5
]],
},
{
'name'
:
'mean'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
0
,
'expected'
:
[[
0
,
0
,
4
,
3
,
1.5
,
0
],
[
1
,
4
,
2
,
0
,
0
,
0
]],
},
{
'name'
:
'mean'
,
'src'
:
[[
5
,
2
],
[
2
,
5
],
[
4
,
3
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
0
,
'expected'
:
[[
3
,
2.5
],
[
3
,
4
]],
},
{
'name'
:
'max'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
0
,
'expected'
:
[[
0
,
0
,
4
,
3
,
2
,
0
],
[
2
,
4
,
3
,
0
,
0
,
0
]],
'expected_arg'
:
[[
-
1
,
-
1
,
3
,
4
,
0
,
1
],
[
1
,
4
,
3
,
-
1
,
-
1
,
-
1
]],
},
{
'name'
:
'max'
,
'src'
:
[[
5
,
2
],
[
2
,
5
],
[
4
,
3
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
0
,
'expected'
:
[[
5
,
3
],
[
4
,
5
]],
'expected_arg'
:
[[
0
,
3
],
[
2
,
1
]],
},
{
'name'
:
'min'
,
'src'
:
[[
2
,
0
,
1
,
4
,
3
],
[
0
,
2
,
1
,
3
,
4
]],
'index'
:
[[
4
,
5
,
4
,
2
,
3
],
[
0
,
0
,
2
,
2
,
1
]],
'dim'
:
-
1
,
'fill_value'
:
9
,
'expected'
:
[[
9
,
9
,
4
,
3
,
1
,
0
],
[
0
,
4
,
1
,
9
,
9
,
9
]],
'expected_arg'
:
[[
-
1
,
-
1
,
3
,
4
,
2
,
1
],
[
0
,
4
,
2
,
-
1
,
-
1
,
-
1
]],
},
{
'name'
:
'min'
,
'src'
:
[[
5
,
2
],
[
2
,
5
],
[
4
,
3
],
[
1
,
3
]],
'index'
:
[
0
,
1
,
1
,
0
],
'dim'
:
0
,
'fill_value'
:
9
,
'expected'
:
[[
1
,
2
],
[
2
,
3
]],
'expected_arg'
:
[[
3
,
0
],
[
1
,
2
]],
#
}, {
#
'name': 'mul',
#
'src': [[5, 2], [2, 5], [4, 3], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 1,
#
'expected': [[5, 6], [8, 15]],
#
}, {
#
'name': 'div',
#
'src': [[2, 1, 1, 4, 2], [1, 2, 1, 2, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 1,
#
'expected': [[1, 1, 0.25, 0.5, 0.5, 1], [0.5, 0.25, 0.5, 1, 1, 1]],
#
}, {
#
'name': 'div',
#
'src': [[4, 2], [2, 1], [4, 2], [1, 2]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 1,
#
'expected': [[0.25, 0.25], [0.125, 0.5]],
#
}, {
#
'name': 'mean',
#
'src': [[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 0,
#
'expected': [[0, 0, 4, 3, 1.5, 0], [1, 4, 2, 0, 0, 0]],
#
}, {
#
'name': 'mean',
#
'src': [[5, 2], [2, 5], [4, 3], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 0,
#
'expected': [[3, 2.5], [3, 4]],
#
}, {
#
'name': 'max',
#
'src': [[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 0,
#
'expected': [[0, 0, 4, 3, 2, 0], [2, 4, 3, 0, 0, 0]],
#
'expected_arg': [[-1, -1, 3, 4, 0, 1], [1, 4, 3, -1, -1, -1]],
#
}, {
#
'name': 'max',
#
'src': [[5, 2], [2, 5], [4, 3], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 0,
#
'expected': [[5, 3], [4, 5]],
#
'expected_arg': [[0, 3], [2, 1]],
#
}, {
#
'name': 'min',
#
'src': [[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]],
#
'index': [[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]],
#
'dim': -1,
#
'fill_value': 9,
#
'expected': [[9, 9, 4, 3, 1, 0], [0, 4, 1, 9, 9, 9]],
#
'expected_arg': [[-1, -1, 3, 4, 2, 1], [0, 4, 2, -1, -1, -1]],
#
}, {
#
'name': 'min',
#
'src': [[5, 2], [2, 5], [4, 3], [1, 3]],
#
'index': [0, 1, 1, 0],
#
'dim': 0,
#
'fill_value': 9,
#
'expected': [[1, 2], [2, 3]],
#
'expected_arg': [[3, 0], [1, 2]],
}]
...
...
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