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[pypi-image]: https://badge.fury.io/py/torch-scatter.svg
[pypi-url]: https://pypi.python.org/pypi/torch-scatter
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[build-image]: https://travis-ci.org/rusty1s/pytorch_scatter.svg?branch=master
[build-url]: https://travis-ci.org/rusty1s/pytorch_scatter
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[coverage-image]: https://codecov.io/gh/rusty1s/pytorch_scatter/branch/master/graph/badge.svg
[coverage-url]: https://codecov.io/github/rusty1s/pytorch_scatter?branch=master
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# PyTorch Scatter

[![PyPI Version][pypi-image]][pypi-url]
[![Build Status][build-image]][build-url]
[![Code Coverage][coverage-image]][coverage-url]
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<p align="center">
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  <img width="50%" src="https://raw.githubusercontent.com/rusty1s/pytorch_scatter/master/docs/source/_figures/add.svg?sanitize=true" />
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</p>

--------------------------------------------------------------------------------

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**[Documentation](http://rusty1s.github.io/pytorch_scatter)**

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This package consists of a small extension library of highly optimized sparse update (scatter) operations for the use in [PyTorch](http://pytorch.org/), which are missing in the main package.
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Scatter operations can be roughly described as reduce operations based on a given "group-index" tensor.
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The package consists of the following operations:
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* [**Scatter Add**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/add.html)
* [**Scatter Sub**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/sub.html)
* [**Scatter Mul**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/mul.html)
* [**Scatter Div**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/div.html)
* [**Scatter Mean**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/mean.html)
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* [**Scatter Std**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/std.html)
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* [**Scatter Min**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/min.html)
* [**Scatter Max**](https://rusty1s.github.io/pytorch_scatter/build/html/functions/max.html)
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All included operations work on varying data types, are implemented both for CPU and GPU and include a backwards implementation.
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## Installation

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Ensure that at least PyTorch 1.1.0 is installed and verify that `cuda/bin` and `cuda/include` are in your `$PATH` and `$CPATH` respectively, *e.g.*:
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```
$ python -c "import torch; print(torch.__version__)"
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>>> 1.0.0
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$ echo $PATH
>>> /usr/local/cuda/bin:...

$ echo $CPATH
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>>> /usr/local/cuda/include:...
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```

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Then run:

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```
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pip install torch-scatter
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```

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If you are running into any installation problems, please create an [issue](https://github.com/rusty1s/pytorch_scatter/issues).
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Be sure to import `torch` first before using this package to resolve symbols the dynamic linker must see.
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## Example
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```py
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import torch
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from torch_scatter import scatter_max

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src = torch.tensor([[2, 0, 1, 4, 3], [0, 2, 1, 3, 4]])
index = torch.tensor([[4, 5, 4, 2, 3], [0, 0, 2, 2, 1]])
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out, argmax = scatter_max(src, index)
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```
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```
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print(out)
tensor([[ 0,  0,  4,  3,  2,  0],
        [ 2,  4,  3,  0,  0,  0]])
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print(argmax)
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tensor([[-1, -1,  3,  4,  0,  1]
        [ 1,  4,  3, -1, -1, -1]])
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```
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## Running tests

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```
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python setup.py test
```