Commits · fdcb72e8460117c95459497424608bb76294f71d · OpenDAS / OpenFold

02 Aug, 2023 1 commit
- Bug fixes for multimer inference and monomer training · fdcb72e8
  Christina Floristean authored Aug 02, 2023
  
  fdcb72e8
02 Jun, 2023 1 commit
- Fixed bug in triangle multiplicative update and added early stop recycling. · c1129bef
  Christina Floristean authored Jun 02, 2023
  
  c1129bef
18 Apr, 2023 1 commit
- Added UniRef30 to data pipeline · 425bdb5e
  Christina Floristean authored Apr 18, 2023
  
  425bdb5e
24 Aug, 2022 1 commit
- adding a script for threading a sequence onto a structure · 71a274d8
  Sam DeLuca authored Aug 24, 2022
  
  71a274d8
19 Jul, 2022 1 commit
- Address template edge case · 236c6865
  Gustaf Ahdritz authored Jul 19, 2022
  
  236c6865
03 Jul, 2022 1 commit
- Finish bringing the alignment index out of hiding · 9a617649
  Gustaf Ahdritz authored Jul 03, 2022
  
  9a617649
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
25 May, 2022 1 commit
- Add AlphaFold-Gap inference · f4043e1c
  Gustaf Ahdritz authored May 25, 2022
  
  f4043e1c
28 Apr, 2022 2 commits
- Work on multimer continues · 4bd1b4d5
  Gustaf Ahdritz authored Apr 28, 2022
  
  4bd1b4d5
- Fix validation metric bugs · 78567a86
  Gustaf Ahdritz authored Apr 27, 2022
  
  78567a86
09 Mar, 2022 1 commit
- Continue work on AlphaFold-Multimer · 57f869d6
  Gustaf Ahdritz authored Mar 09, 2022
  
  57f869d6
24 Feb, 2022 1 commit
- Continue multimer implementation · 100485dd
  Gustaf Ahdritz authored Feb 24, 2022
  
  100485dd
11 Feb, 2022 1 commit
- Add missing function · a3e8ebbc
  Gustaf Ahdritz authored Feb 10, 2022
  
  a3e8ebbc
03 Feb, 2022 3 commits
- Remove alignment index · 3279b28d
  Gustaf Ahdritz authored Feb 03, 2022
  
  3279b28d
- Prep for training · f30d77b7
  Gustaf Ahdritz authored Jan 27, 2022
  
  f30d77b7
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
20 Dec, 2021 2 commits
- Add default CPU count to AlignmentRunner · 43116de0
  Gustaf Ahdritz authored Dec 19, 2021
  
  43116de0
- Make AlignmentRunner more flexible · edffead3
  Gustaf Ahdritz authored Dec 19, 2021
  
  edffead3
30 Nov, 2021 3 commits
- Fix datatypes in PDB parsing · e0c7d445
  Gustaf Ahdritz authored Nov 30, 2021
  
  e0c7d445
- Add option to select chains in PDB files · 699f23fd
  Gustaf Ahdritz authored Nov 30, 2021
  
  699f23fd
- Add non-distillation PDB parsing · 5161c0f6
  Gustaf Ahdritz authored Nov 30, 2021
  
  5161c0f6
25 Nov, 2021 1 commit
- Fix .core parsing bug · 6133ea95
  Gustaf Ahdritz authored Nov 24, 2021
  
  6133ea95
22 Nov, 2021 1 commit
- Add option to run with no MSAs · 61df432b
  Gustaf Ahdritz authored Nov 22, 2021
  
  61df432b
10 Nov, 2021 2 commits
- Add more ProteinNet functionality · 2c7ce956
  Gustaf authored Nov 10, 2021
  
  2c7ce956
- Begin to add ProteinNet support (WIP) · 22cc45a8
  Gustaf authored Nov 09, 2021
  
  22cc45a8
30 Oct, 2021 1 commit
- Remove warning · 56f0a8a0
  Gustaf Ahdritz authored Oct 29, 2021
  
  56f0a8a0
29 Oct, 2021 1 commit
- Remove debugging print statement · e69b2a11
  Gustaf Ahdritz authored Oct 29, 2021
  
  e69b2a11
28 Oct, 2021 3 commits
- Make template code use less memory during inference · 2faff451
  Gustaf Ahdritz authored Oct 28, 2021
  
  2faff451
- Add empty template handling to inference pipeline · 407d9924
  Gustaf Ahdritz authored Oct 28, 2021
  
  407d9924
- Fix empty template feature bug · d71d37ff
  Gustaf Ahdritz authored Oct 27, 2021
  
  d71d37ff
26 Oct, 2021 2 commits
- Make template parsing optional · 81ae777d
  Gustaf Ahdritz authored Oct 26, 2021
  
  81ae777d
- Add ProteinNet support to parser · b5f885d0
  Gustaf Ahdritz authored Oct 26, 2021
  
  b5f885d0
23 Oct, 2021 1 commit
- Fix PDB parsing, add distillation MSA cropping · 6298a3e6
  Gustaf Ahdritz authored Oct 23, 2021
  
  6298a3e6
17 Oct, 2021 1 commit
- Refactor data pipeline; add distillation parsing · a59ae7c1
  Gustaf Ahdritz authored Oct 17, 2021
  
  a59ae7c1
16 Oct, 2021 2 commits
- Standardize code style · 07e64267
  Gustaf Ahdritz authored Oct 16, 2021
  
  07e64267
- Restore missing license notices · de07730f
  Gustaf Ahdritz authored Oct 16, 2021
  
  de07730f
15 Oct, 2021 1 commit
- Add training parsers · d48c052c
  Gustaf Ahdritz authored Oct 15, 2021
  
  d48c052c
08 Oct, 2021 3 commits
- Moved the DataPipeline class (which uses numpy) to a different directory. · f8c81df4
  Sachin Kadyan authored Oct 08, 2021
  
  f8c81df4
- Moved all external tool executor classes (which use np) to a different directory. · 822fda7d
  Sachin Kadyan authored Oct 08, 2021
  
  822fda7d
- Fixes the import paths for the internal imports. · c8e54318
  Sachin Kadyan authored Oct 08, 2021
  
  c8e54318