GitLab

Add docker

Minor changes to shell commands

Two changes proposed here:

1. We add `bash` before the commands so that they are explicitly run by `bash`; otherwise, they would need to be `chmod +x` before the scripts could be executed standalone.
2. We changed the script names for downloading `mmseq` resources because the script names didn't match up with what's in the `scripts/` directory.

Added obsolete_pdbs_file_path flag in the training script.

Install Script Installs All Dependencies at Once

update loss logging and stop sampling recycling iterations in validation