Commits · f65b75fe48cf0897023c10baf0fe0467ca8865e2 · OpenDAS / OpenFold

"examples/vscode:/vscode.git/clone" did not exist on "e7a49b039e28186111df397ca9ff8baaae720911"

03 Nov, 2023 1 commit
- Fix for loading old OF weights into refactored model · f65b75fe
  Christina Floristean authored Nov 03, 2023
  
  f65b75fe
02 Nov, 2023 1 commit
- Unit test fixes for when AF2 is not installed · 5fcd6ed2
  Christina Floristean authored Nov 02, 2023
  
  5fcd6ed2
10 Oct, 2023 3 commits
- Added test for no column attention Evoformer · 28334db3
  Sachin Kadyan authored Sep 18, 2023
  
  28334db3
- Added sequence embedding mode test for `model`. · a7c0d0d1
  Sachin Kadyan authored Sep 18, 2023
  
  a7c0d0d1
- Added test for PreembeddingEmbedder · 777d738a
  Sachin Kadyan authored Sep 17, 2023
  
  777d738a
21 Sep, 2023 1 commit
- fixed error with anchor selections; updated permutation unittest · f3c1af45
  Geoffrey Yu authored Sep 21, 2023
  
  f3c1af45
20 Sep, 2023 1 commit
- Adds cuda wrapper to pytorch vectors to fix TestModel.test_dry_run · 8baae516
  Jennifer Wei authored Sep 20, 2023
  
  8baae516
18 Sep, 2023 1 commit
- Adds float wrapper to to vectors in TestExtraMSAStack in · 48668ca3
  Jennifer Wei authored Sep 18, 2023
```
 test_evoformer.py
```
  48668ca3
03 Sep, 2023 2 commits
- added test3 to test if permutated tensors end up as expected · cec5a426
  Geoffrey Yu authored Sep 03, 2023
  
  cec5a426
- update permutation unittest · c5f16efc
  Geoffrey Yu authored Sep 03, 2023
  
  c5f16efc
10 Aug, 2023 1 commit
- Minor model test fix · 3de188e9
  Christina Floristean authored Aug 10, 2023
  
  3de188e9
04 Aug, 2023 3 commits
- remove unfinished test file · e84df271
  Geoffrey Yu authored Aug 04, 2023
  
  e84df271
- fixed TypeError: enabled must be a bool (got Tensor) when training multimer · d7f3d622
  Geoffrey Yu authored Aug 04, 2023
  
  d7f3d622
- Refactored multimer config update · 82bda2d6
  Christina Floristean authored Aug 03, 2023
  
  82bda2d6
03 Aug, 2023 4 commits
- Minor fixes/reformatting for recent multimer training PR · 30764cf9
  Christina Floristean authored Aug 03, 2023
  
  30764cf9
- update train_mmcifs_cache so that now only use one structure for testing · e963726b
  Geoffrey Yu authored Aug 03, 2023
  
  e963726b
- removed old data and script for permutation unittest. now working on the new permutation unittest · 139ea9a6
  Geoffrey Yu authored Aug 03, 2023
  
  139ea9a6
- removed unused alignment files · e2193f77
  Geoffrey Yu authored Aug 03, 2023
  
  e2193f77
02 Aug, 2023 1 commit
- Bug fixes for multimer inference and monomer training · fdcb72e8
  Christina Floristean authored Aug 02, 2023
  
  fdcb72e8
21 Jul, 2023 2 commits
- added train_mmcifs_cache.json · a1ef4c8f
  Geoffrey Yu authored Jul 21, 2023
  
  a1ef4c8f
- update test files · d7162be4
  Geoffrey Yu authored Jul 21, 2023
  
  d7162be4
16 Jul, 2023 3 commits
- added test alignment files for dataloader unittest · dbc0b085
  Dingquan Yu authored Jul 16, 2023
  
  dbc0b085
- remove unnecessary test files · 39d67ba5
  Dingquan Yu authored Jul 16, 2023
  
  39d67ba5
- update test script · 173f055e
  Dingquan Yu authored Jul 16, 2023
  
  173f055e
14 Jul, 2023 1 commit
- update test · caac73c0
  Geoffrey Yu authored Jul 14, 2023
  
  caac73c0
11 Jul, 2023 1 commit
- update test script · ca340ce8
  Geoffrey Yu authored Jul 11, 2023
  
  ca340ce8
10 Jul, 2023 1 commit
- update test script · 42a89403
  Geoffrey Yu authored Jul 10, 2023
  
  42a89403
09 Jul, 2023 1 commit
- update test scripts · 71fdc063
  Geoffrey Yu authored Jul 09, 2023
  
  71fdc063
07 Jul, 2023 1 commit
- correct the file name · 31c976b5
  Geoffrey Yu authored Jul 07, 2023
  
  31c976b5
06 Jul, 2023 3 commits
- added small test, train, and validation alignment files · a4000358
  Geoffrey Yu authored Jul 06, 2023
  
  a4000358
- add test script for multimer datamodule · 510b12f7
  Geoffrey Yu authored Jul 06, 2023
  
  510b12f7
- modify imports and header · 8f08fbb7
  Geoffrey Yu authored Jul 06, 2023
  
  8f08fbb7
30 Jun, 2023 3 commits
- change it back to unittest testunit · 7e969e48
  Geoffrey Yu authored Jun 30, 2023
  
  7e969e48
- update test codes so that it generates correct structure of input data · 1e268fd5
  Geoffrey Yu authored Jun 30, 2023
  
  1e268fd5
- fixed the input data generation so that true_msa and bert_mask shapes are... · 1b4fc115
  Geoffrey Yu authored Jun 30, 2023
```
fixed the input data generation so that true_msa and bert_mask shapes are correct otherwise crashes in loss calculations
```
  1b4fc115
29 Jun, 2023 2 commits
- updated the loss config so that the masked msa dim is 22 instead of 23 · 9ebb1e1a
  Geoffrey Yu authored Jun 29, 2023
  
  9ebb1e1a
- update test code · c8a3f35e
  Geoffrey Yu authored Jun 29, 2023
  
  c8a3f35e
28 Jun, 2023 1 commit
- added batch_size dimension · c69053e5
  Geoffrey Yu authored Jun 28, 2023
  
  c69053e5
26 Jun, 2023 1 commit
- update the test input to be A2B3 · 5621ac05
  Geoffrey Yu authored Jun 26, 2023
  
  5621ac05
24 Jun, 2023 1 commit
- added example label files · a741b42a
  Geoffrey Yu authored Jun 24, 2023
  
  a741b42a