Commits · d6b36a80e3ee82eee8ac09215fce553d822f86a3 · OpenDAS / OpenFold

10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
25 May, 2022 3 commits
- Fix another undefined reference · a1cf7454
  Gustaf Ahdritz authored May 25, 2022
  
  a1cf7454
- Fix undefined reference · be87500a
  Gustaf Ahdritz authored May 25, 2022
  
  be87500a
- Add AlphaFold-Gap inference · f4043e1c
  Gustaf Ahdritz authored May 25, 2022
  
  f4043e1c
13 May, 2022 1 commit
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
21 Apr, 2022 1 commit
- fixing dockerfile and small bug in run_pretrained_openfold.py · 102c446f
  Sam DeLuca authored Apr 21, 2022
  
  102c446f
30 Mar, 2022 4 commits
- Add latest FASTA parser · cdadff32
  Gustaf Ahdritz authored Mar 30, 2022
  
  cdadff32
- One more FASTA parsing fix... · dcc90728
  Gustaf Ahdritz authored Mar 29, 2022
  
  dcc90728
- Fix FASTA parsing again (hopefully for good) · 094e338f
  Gustaf Ahdritz authored Mar 29, 2022
  
  094e338f
- Fix FASTA parsing bug in inference script · c59a85b6
  Gustaf Ahdritz authored Mar 29, 2022
  
  c59a85b6
29 Mar, 2022 1 commit
- Fix FASTA parsing bug in inference script, add option to save outputs · 16e0082f
  Gustaf Ahdritz authored Mar 29, 2022
  
  16e0082f
04 Feb, 2022 1 commit
- Add GPU relaxation · 721e43be
  Gustaf Ahdritz authored Feb 03, 2022
  
  721e43be
20 Dec, 2021 1 commit
- Make AlignmentRunner more flexible · edffead3
  Gustaf Ahdritz authored Dec 19, 2021
  
  edffead3
10 Dec, 2021 1 commit
- Made initialization consistent for template_featurizer in all modules. · ddf922df
  Sachin Kadyan authored Dec 10, 2021
```
Added obsolete_pdbs_file and release_dates_path in all initialization points.
```
  ddf922df
25 Nov, 2021 1 commit
- Fix bug in inference script weight importing · 341ff3d9
  Gustaf Ahdritz authored Nov 25, 2021
  
  341ff3d9
20 Nov, 2021 1 commit
- Remove submodule scripting from inference script · b8b5be86
  Gustaf Ahdritz authored Nov 20, 2021
  
  b8b5be86
19 Nov, 2021 1 commit
- Make more components TorchScript-able, add tracing · 34e9363c
  Gustaf Ahdritz authored Nov 19, 2021
  
  34e9363c
18 Nov, 2021 1 commit
- Update TorchScript call in inference script · 8d1119df
  Gustaf Ahdritz authored Nov 18, 2021
  
  8d1119df
16 Nov, 2021 1 commit
- Replace time.time() with time.perf_counter() · 5a928b47
  Gustaf Ahdritz authored Nov 16, 2021
  
  5a928b47
13 Nov, 2021 1 commit
- Add mechanism for TorchScript'ing primitives during inference · 3260242f
  Gustaf Ahdritz authored Nov 13, 2021
  
  3260242f
12 Nov, 2021 2 commits
- Add batched inference · 7b29cac4
  Gustaf Ahdritz authored Nov 12, 2021
  
  7b29cac4
- Add missing bracket · ceb1f087
  Gustaf Ahdritz authored Nov 12, 2021
  
  ceb1f087
09 Nov, 2021 1 commit
- Add MMseqs2 MSA generation · 36f317be
  Gustaf authored Nov 09, 2021
  
  36f317be
30 Oct, 2021 1 commit
- Speed up template featurizer · 9d4c9357
  Gustaf Ahdritz authored Oct 29, 2021
  
  9d4c9357
28 Oct, 2021 1 commit
- Add empty template handling to inference pipeline · 407d9924
  Gustaf Ahdritz authored Oct 28, 2021
  
  407d9924
20 Oct, 2021 1 commit
- Add warning to run script · 267b1bfd
  Gustaf Ahdritz authored Oct 20, 2021
  
  267b1bfd
18 Oct, 2021 1 commit
- Add config change to run script · 4ab59433
  Gustaf Ahdritz authored Oct 17, 2021
  
  4ab59433
17 Oct, 2021 1 commit
- Refactor data pipeline; add distillation parsing · a59ae7c1
  Gustaf Ahdritz authored Oct 17, 2021
  
  a59ae7c1
16 Oct, 2021 1 commit
- Restore missing license notices · de07730f
  Gustaf Ahdritz authored Oct 16, 2021
  
  de07730f
15 Oct, 2021 1 commit
- Add training parsers · d48c052c
  Gustaf Ahdritz authored Oct 15, 2021
  
  d48c052c
12 Oct, 2021 3 commits
- Reformat README, require run script option · 29315bdc
  Gustaf Ahdritz authored Oct 11, 2021
  
  29315bdc
- Rename runner, update command in README · 1b802b29
  Gustaf Ahdritz authored Oct 11, 2021
  
  1b802b29
- Refactor run script (WIP) · 9b60d737
  Gustaf Ahdritz authored Oct 11, 2021
  
  9b60d737
10 Oct, 2021 1 commit
- Rename run script parameter · 376c60c7
  Gustaf Ahdritz authored Oct 10, 2021
  
  376c60c7
09 Oct, 2021 2 commits
- Move config script, reformat data_transforms · 651949b2
  Gustaf Ahdritz authored Oct 08, 2021
  
  651949b2
- Tweak run script args, roll back repo to Python 3.7 (for Colab) · f4150fa1
  Gustaf Ahdritz authored Oct 08, 2021
  
  f4150fa1
08 Oct, 2021 3 commits
- Make minor formatting edits · e8e0b66f
  Gustaf Ahdritz authored Oct 08, 2021
  
  e8e0b66f
- Moved the DataPipeline class (which uses numpy) to a different directory. · f8c81df4
  Sachin Kadyan authored Oct 08, 2021
  
  f8c81df4
- Integrated the feature processing pipeline in the 'main' runner script. · 9337ed13
  Sachin Kadyan authored Oct 08, 2021
  
  9337ed13
30 Sep, 2021 1 commit
- Add pTM config options, spruce up pretrained script, add test script · 54317fe4
  Gustaf Ahdritz authored Sep 30, 2021
  
  54317fe4