Commits · c07075cf7208ee97afcdc095438e2cafb8af3620 · OpenDAS / OpenFold

13 May, 2024 36 commits
- in scripts/utils.py account for case where no conda environment is specified. · c07075cf
  Jennifer Wei authored May 13, 2024
  
  c07075cf
- remove mpipy from pip install requirements · dc93d33c
  Jennifer Wei authored May 13, 2024
```
An mpi lib file is missing from the currently selected docker image. More testing is needed to support mpi mode for the docker CI.
```
  dc93d33c
- fix typo in environment.yml · 1647ec90
  Jennifer Wei authored May 13, 2024
  
  1647ec90
- Merge branch 'main' into pl_upgrades · a8c61c62
  Jennifer Wei authored May 13, 2024
  
  a8c61c62
- Update docker-image.yml · e5ce2196
  Jennifer Wei authored May 13, 2024
  
  e5ce2196
- Update docker-image.yml · 3ed09c63
  Jennifer Wei authored May 13, 2024
  
  3ed09c63
- Adds example directory · cc565fde
  jnwei authored May 10, 2024
  
  cc565fde
- Update training OpenFold docs with correct paths. · 0b30bb85
  jnwei authored May 10, 2024
  
  0b30bb85
- adds mmseqs2 to environment.yml for clustering · e338f208
  jnwei authored May 09, 2024
  
  e338f208
- Shorten README.md main page. · 78644cdf
  jnwei authored May 09, 2024
  
  78644cdf
- make space for docker CI · 89c756da
  jnwei authored May 06, 2024
  
  89c756da
- Adds mkl version to environment.yml · a744abee
  Jennifer authored Apr 30, 2024
  
  a744abee
- minor language edits · 55c1e0ee
  jnwei authored May 08, 2024
  
  55c1e0ee
- small edits to main page · 6261c95b
  jnwei authored May 08, 2024
  
  6261c95b
- creates link to FAQ in documentation · f1175abf
  jnwei authored May 08, 2024
  
  f1175abf
- Adds FAQ section · d64dffdd
  jnwei authored May 08, 2024
  
  d64dffdd
- add convert v1 weights instructions · 6a52cc43
  jnwei authored May 08, 2024
  
  6a52cc43
- Add addtional inference pages · 44e57338
  jnwei authored May 08, 2024
  
  44e57338
- updates to Inference.md · 9c98e574
  jnwei authored May 08, 2024
  
  9c98e574
- cleanup makefiles and original readme · 9f1e0a8d
  jnwei authored May 08, 2024
  
  9f1e0a8d
- replace doc environment pip dependencies with conda builds · d4a14b6b
  jnwei authored May 08, 2024
  
  d4a14b6b
- fix typo in readthedocs.yaml · 0b724bee
  jnwei authored May 08, 2024
  
  0b724bee
- Rough draft dump of docs and readthedocs build · 4873c028
  jnwei authored May 08, 2024
  
  4873c028
- Initial commit for sphinx documentation. · 26f8761b
  jnwei authored Mar 20, 2024
  
  26f8761b
- Update test_permutation.py · 5221ed47
  Jennifer Wei authored May 11, 2024
```
Fixed a small typo in permutation unit test docstring
```
  5221ed47
- fixed typing error of anchor_gt_residue · dc2da1ff
  Dingquan Yu authored May 10, 2024
  
  dc2da1ff
- Update tests and comments · ad414ec9
  Dingquan Yu authored May 10, 2024
  
  ad414ec9
- update comments;fixed typos · eb262d2b
  Dingquan Yu authored May 10, 2024
  
  eb262d2b
- added comments · 515b082d
  Geoffrey Yu authored Mar 21, 2024
  
  515b082d
- fixed typing errors; added more comments · 9597368d
  Geoffrey Yu authored Mar 21, 2024
  
  9597368d
- make sure no padded features are going to be selected as anchors · 939fd0aa
  Geoffrey Yu authored Feb 20, 2024
  
  939fd0aa
- added typing hints and fixed some comments · 9f964fe3
  Geoffrey Yu authored Feb 16, 2024
  
  9f964fe3
- restore to the verison on main · 2669287e
  Geoffrey Yu authored Feb 15, 2024
  
  2669287e
- remove unnecessary lines · b5427018
  Geoffrey Yu authored Feb 15, 2024
  
  b5427018
- fixed bugs in unittests for multi-chain permutation. now working on extra subtests · 54ec5c4c
  Geoffrey Yu authored Feb 15, 2024
  
  54ec5c4c
- make sure padded asym_id won't affect permutation steps · 0eaf08ad
  Geoffrey Yu authored Feb 15, 2024
  
  0eaf08ad
11 May, 2024 1 commit
- Update docker-image.yml · 12eae13f
  Jennifer Wei authored May 11, 2024
  
  12eae13f
06 May, 2024 3 commits
- make space for docker CI · ed69f066
  jnwei authored May 06, 2024
  
  ed69f066
- pins mkl version to 2022 to avoid conda environment conflict · f10f6620
  Jennifer Wei authored May 06, 2024
  
  f10f6620
- Merge remote-tracking branch 'refs/remotes/jnwei/pl_upgrades' into pl_upgrades · c715b138
  Jennifer Wei authored May 06, 2024
  
  c715b138