Commits · bf3eed6e82eed51d5e12fb9fa6830f5f1398ca51 · OpenDAS / OpenFold

21 Oct, 2021 1 commit
- Remove dependency on training-time feature · bf3eed6e
  Gustaf Ahdritz authored Oct 20, 2021
  
  bf3eed6e
20 Oct, 2021 7 commits
- Add warning to run script · 267b1bfd
  Gustaf Ahdritz authored Oct 20, 2021
  
  267b1bfd
- Add testing instructions to README · a3a27143
  Gustaf Ahdritz authored Oct 20, 2021
  
  a3a27143
- Move template pair stack out of single-template block (for DeepSpeed) · aea444ed
  Gustaf Ahdritz authored Oct 20, 2021
  
  aea444ed
- Remove .item() calls · 896f8935
  Gustaf Ahdritz authored Oct 20, 2021
  
  896f8935
- Update EMA · 1dcff6aa
  Gustaf Ahdritz authored Oct 19, 2021
  
  1dcff6aa
- Fix loss bug · 12aa565e
  Gustaf Ahdritz authored Oct 19, 2021
  
  12aa565e
- Bring tests up to speed · 49767099
  Gustaf Ahdritz authored Oct 19, 2021
  
  49767099
19 Oct, 2021 2 commits
- Prettyprint mmCIF cache · a6f56d16
  Gustaf Ahdritz authored Oct 19, 2021
  
  a6f56d16
- Fix typo in feature name · 5d449184
  Gustaf Ahdritz authored Oct 19, 2021
  
  5d449184
18 Oct, 2021 4 commits
- Add mmCIF cache generation script, remove verbose warnings · 23886619
  Gustaf Ahdritz authored Oct 18, 2021
  
  23886619
- Fix cropping bug · f649cccd
  Gustaf Ahdritz authored Oct 17, 2021
  
  f649cccd
- Add config change to run script · 4ab59433
  Gustaf Ahdritz authored Oct 17, 2021
  
  4ab59433
- Make chunk size more flexible, reduce verbosity · b026de28
  Gustaf Ahdritz authored Oct 17, 2021
  
  b026de28
17 Oct, 2021 1 commit
- Refactor data pipeline; add distillation parsing · a59ae7c1
  Gustaf Ahdritz authored Oct 17, 2021
  
  a59ae7c1
16 Oct, 2021 2 commits
- Standardize code style · 07e64267
  Gustaf Ahdritz authored Oct 16, 2021
  
  07e64267
- Restore missing license notices · de07730f
  Gustaf Ahdritz authored Oct 16, 2021
  
  de07730f
15 Oct, 2021 2 commits
- Fix faulty symlink command in install script · 5497655c
  Gustaf Ahdritz authored Oct 15, 2021
  
  5497655c
- Add training parsers · d48c052c
  Gustaf Ahdritz authored Oct 15, 2021
  
  d48c052c
12 Oct, 2021 7 commits
- Exclude tests and scripts from import · eeda001c
  Gustaf Ahdritz authored Oct 12, 2021
  
  eeda001c
- Add sample DeepSpeed config · 8bbe9e5a
  Gustaf Ahdritz authored Oct 12, 2021
  
  8bbe9e5a
- Reformat README, require run script option · 29315bdc
  Gustaf Ahdritz authored Oct 11, 2021
  
  29315bdc
- Rename runner, update command in README · 1b802b29
  Gustaf Ahdritz authored Oct 11, 2021
  
  1b802b29
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · 911795ca
  Gustaf Ahdritz authored Oct 11, 2021
  
  911795ca
- Refactor run script (WIP) · 9b60d737
  Gustaf Ahdritz authored Oct 11, 2021
  
  9b60d737
- Fix TM calculation bugs · 71189e20
  Gustaf Ahdritz authored Oct 11, 2021
  
  71189e20
10 Oct, 2021 2 commits
- Rename run script parameter · 376c60c7
  Gustaf Ahdritz authored Oct 10, 2021
  
  376c60c7
- Add TM calculations, move testing wrappers · a3c2ae51
  Gustaf Ahdritz authored Oct 10, 2021
  
  a3c2ae51
09 Oct, 2021 6 commits
- Fix incorrect types in data pipeline · 9eda0b43
  Gustaf Ahdritz authored Oct 09, 2021
  
  9eda0b43
- Fix another typo · 05e08750
  Gustaf Ahdritz authored Oct 08, 2021
  
  05e08750
- Remove Python 3.9-only math function · fb785094
  Gustaf Ahdritz authored Oct 08, 2021
  
  fb785094
- Fix typo · 3bb47f89
  Gustaf Ahdritz authored Oct 08, 2021
  
  3bb47f89
- Move config script, reformat data_transforms · 651949b2
  Gustaf Ahdritz authored Oct 08, 2021
  
  651949b2
- Tweak run script args, roll back repo to Python 3.7 (for Colab) · f4150fa1
  Gustaf Ahdritz authored Oct 08, 2021
  
  f4150fa1
08 Oct, 2021 6 commits
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · bec2292d
  Gustaf Ahdritz authored Oct 08, 2021
  
  bec2292d
- Fix setup.py for Colab · 82b24508
  Gustaf Ahdritz authored Oct 08, 2021
  
  82b24508
- Added a wrapper shell script to download all databases by executing each of the individual scripts. · 83fa3b90
  Sachin Kadyan authored Oct 08, 2021
  
  83fa3b90
- Added the shell script to download the uniref90 database. · e8ac4317
  Sachin Kadyan authored Oct 08, 2021
  
  e8ac4317
- Added the shell script to download the uniclust30 database. · a78c0445
  Sachin Kadyan authored Oct 08, 2021
  
  a78c0445
- Added the shell script to download the small BFD database. · ac8d5677
  Sachin Kadyan authored Oct 08, 2021
  
  ac8d5677