Commits · b84dd8cb453f35ac829f1cfde4dc26a2e151c4e3 · OpenDAS / OpenFold

15 Jun, 2022 1 commit
- Fix chunk size tuner bug · b84dd8cb
  Gustaf Ahdritz authored Jun 14, 2022
  
  b84dd8cb
14 Jun, 2022 8 commits
- Remove nonexistent parameter · 4bfd5bf0
  Gustaf Ahdritz authored Jun 14, 2022
  
  4bfd5bf0
- Remove removed function call · ceb95303
  Gustaf Ahdritz authored Jun 14, 2022
  
  ceb95303
- Fix alignment command in README · 82e02065
  Gustaf Ahdritz authored Jun 14, 2022
  
  82e02065
- Clarify training instructions · d90fa5e1
  Gustaf Ahdritz authored Jun 13, 2022
  
  d90fa5e1
- Tweak README wording again · 096c68ea
  Gustaf Ahdritz authored Jun 13, 2022
  
  096c68ea
- Tweak README wording · 8e21f27f
  Gustaf Ahdritz authored Jun 13, 2022
  
  8e21f27f
- Add new inference features to README · ca2e07bf
  Gustaf Ahdritz authored Jun 13, 2022
  
  ca2e07bf
- Improve memory efficiency of structure module · 578541c8
  Gustaf Ahdritz authored Jun 13, 2022
  
  578541c8
12 Jun, 2022 6 commits
- Fix unit test · e9e3fbdc
  Gustaf Ahdritz authored Jun 12, 2022
  
  e9e3fbdc
- Change chunk tuning defaults · 7d442323
  Gustaf Ahdritz authored Jun 12, 2022
  
  7d442323
- Add chunk size tuning · 4c1cf6e2
  Gustaf Ahdritz authored Jun 12, 2022
  
  4c1cf6e2
- Remove redundant checkpoint functions · 8036a213
  Gustaf Ahdritz authored Jun 11, 2022
  
  8036a213
- Fix bug in template code · 5ada323e
  Gustaf Ahdritz authored Jun 11, 2022
  
  5ada323e
- Speed up inference · bebbe782
  Gustaf Ahdritz authored Jun 11, 2022
  
  bebbe782
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
25 May, 2022 9 commits
- Add AlphaFold-Multimer disclaimer · ec5619fc
  Gustaf Ahdritz authored May 25, 2022
  
  ec5619fc
- Add note on AlphaFold-Gap · 064cd20d
  Gustaf Ahdritz authored May 25, 2022
  
  064cd20d
- Fix another undefined reference · a1cf7454
  Gustaf Ahdritz authored May 25, 2022
  
  a1cf7454
- Fix undefined reference · be87500a
  Gustaf Ahdritz authored May 25, 2022
  
  be87500a
- Fix config default · 197029b1
  Gustaf Ahdritz authored May 25, 2022
  
  197029b1
- Add AlphaFold-Gap inference · f4043e1c
  Gustaf Ahdritz authored May 25, 2022
  
  f4043e1c
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 89f05497
  Gustaf Ahdritz authored May 25, 2022
  
  89f05497
- Never checkpoint with grad disabled · a14e8360
  Gustaf Ahdritz authored May 25, 2022
  
  a14e8360
- Avoid calling the checkpointing function with grad disabled · 67e34d92
  Gustaf Ahdritz authored May 25, 2022
  
  67e34d92
13 May, 2022 5 commits
- Update pretrained script usage notes · 24118e80
  Gustaf Ahdritz authored May 13, 2022
  
  24118e80
- Add LMA writeup · c290ff87
  Gustaf Ahdritz authored May 12, 2022
  
  c290ff87
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 1fc3ca2e
  Gustaf Ahdritz authored May 12, 2022
  
  1fc3ca2e
- Update inference script usage example · e4b701f0
  Gustaf Ahdritz authored May 12, 2022
  
  e4b701f0
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
11 May, 2022 1 commit
- Fix typo · a5df96c3
  Gustaf Ahdritz authored May 10, 2022
  
  a5df96c3
10 May, 2022 1 commit
- Bullet README · 237e26c4
  Gustaf Ahdritz authored May 10, 2022
  
  237e26c4
09 May, 2022 3 commits
- Trim OpenFoldBatchCollator · c4a4df22
  Gustaf Ahdritz authored May 09, 2022
  
  c4a4df22
- Merge pull request #101 from CyrusBiotechnology/fix-docker-keys · 954ed3d3
  Gustaf Ahdritz authored May 09, 2022
```
add correct GPG key to dockerfile
```
  954ed3d3
- add correct GPG key to dockerfile · fdec6ef5
  Sam DeLuca authored May 09, 2022
  
  fdec6ef5
07 May, 2022 4 commits
- Add shape assertion to rotation code · cd41d73f
  Gustaf Ahdritz authored May 07, 2022
  
  cd41d73f
- Further simplify rotation multiplication code · 253aff64
  Gustaf Ahdritz authored May 07, 2022
  
  253aff64
- Simplify rotation multiplication code · 4e9f7a9d
  Gustaf Ahdritz authored May 07, 2022
  
  4e9f7a9d
- Remove redundant condition · 1eb4fcdd
  Gustaf Ahdritz authored May 07, 2022
  
  1eb4fcdd
28 Apr, 2022 1 commit
- Fix bug in MSA chunking code · 576174f0
  Gustaf Ahdritz authored Apr 28, 2022
  
  576174f0