Commits · a48e22eae97472bc4dbb32340b4530fa2ee91b9b · OpenDAS / OpenFold

04 Feb, 2022 6 commits
- Update commands in README · a48e22ea
  Gustaf Ahdritz authored Feb 03, 2022
  
  a48e22ea
- Add GPU relaxation · 721e43be
  Gustaf Ahdritz authored Feb 03, 2022
  
  721e43be
- Improve loss documentation · fe98aa32
  Gustaf Ahdritz authored Feb 03, 2022
  
  fe98aa32
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 286b7f05
  Gustaf Ahdritz authored Feb 03, 2022
  
  286b7f05
- Remove duplicate code · cdaaceda
  Gustaf Ahdritz authored Feb 03, 2022
  
  cdaaceda
- Disable internal extra MSA chunking during inference · c7f26b40
  Gustaf Ahdritz authored Feb 03, 2022
  
  c7f26b40
03 Feb, 2022 17 commits
- Remove alignment index · 3279b28d
  Gustaf Ahdritz authored Feb 03, 2022
  
  3279b28d
- Remove redundant checkpoint · 55bf27d4
  Gustaf Ahdritz authored Feb 03, 2022
  
  55bf27d4
- Merge pull request #76 from aqlaboratory/chunking_experiment_rebased · cfd0fc6e
  Gustaf Ahdritz authored Feb 03, 2022
  
  cfd0fc6e
- Remove more undefined references · 2726892a
  Gustaf Ahdritz authored Feb 03, 2022
  
  2726892a
- Remove undefined reference · 9285d94d
  Gustaf Ahdritz authored Feb 03, 2022
  
  9285d94d
- Merge branch 'main' of github.com:aqlaboratory/openfold into chunking_experiment · 998155e9
  Gustaf Ahdritz authored Feb 03, 2022
  
  998155e9
- Make filtering more efficient · 676b6668
  Gustaf Ahdritz authored Feb 01, 2022
  
  676b6668
- Merge · fb341b17
  Gustaf Ahdritz authored Jan 27, 2022
  
  fb341b17
- Prep for training · f30d77b7
  Gustaf Ahdritz authored Jan 27, 2022
  
  f30d77b7
- Update config · 0dc316c3
  Gustaf Ahdritz authored Jan 27, 2022
  
  0dc316c3
- Fix no-DeepSpeed DDP · b066dd55
  Gustaf Ahdritz authored Jan 21, 2022
  
  b066dd55
- Merge branch 'main' of https://github.com/aqlaboratory/openfold into chunking_experiment · 8ffec72a
  Gustaf Ahdritz authored Jan 18, 2022
  
  8ffec72a
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
- DeepSpeed + PL bfloat16 working · 1df4991d
  Gustaf Ahdritz authored Jan 13, 2022
  
  1df4991d
- Beef up alignment script · 02fc4376
  Gustaf Ahdritz authored Jan 10, 2022
  
  02fc4376
- Fix mask casting · 53bb9c10
  Gustaf Ahdritz authored Jan 10, 2022
  
  53bb9c10
- Prep for bfloat16 training · a8601529
  Gustaf Ahdritz authored Jan 10, 2022
  
  a8601529
02 Feb, 2022 5 commits
- Remove pyindex installation · c9e0f894
  Gustaf Ahdritz authored Feb 01, 2022
  
  c9e0f894
- Remove pyindex installation · 8115bdca
  Gustaf Ahdritz authored Feb 01, 2022
  
  8115bdca
- Add git installation to Dockerfile · 52f2c511
  Gustaf Ahdritz authored Feb 01, 2022
  
  52f2c511
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 26660086
  Gustaf Ahdritz authored Feb 01, 2022
  
  26660086
- Update Colab · 8e908c0f
  Gustaf Ahdritz authored Feb 01, 2022
  
  8e908c0f
01 Feb, 2022 10 commits
- Try different DLLogger installation · 0822e233
  Gustaf Ahdritz authored Feb 01, 2022
  
  0822e233
- Remove broken aria2c install from environment.yml · 786eeccc
  Gustaf Ahdritz authored Feb 01, 2022
  
  786eeccc
- Fix NVIDIA loggier issue in install script · 81ebd4a8
  Gustaf Ahdritz authored Feb 01, 2022
  
  81ebd4a8
- Remove unnecessary symlink · fb02f39a
  Gustaf Ahdritz authored Feb 01, 2022
  
  fb02f39a
- Merge pull request #71 from CyrusBiotechnology/add-docker · 3ea45f90
  Gustaf Ahdritz authored Feb 01, 2022
```
Add docker
```
  3ea45f90
- reverting accidental chance to third party dep install script · 4cd2aba7
  Sam DeLuca authored Feb 01, 2022
  
  4cd2aba7
- adding github CI pipeline to test the docker container build · 7fe44553
  Sam DeLuca authored Feb 01, 2022
  
  7fe44553
- Update AlphaFold parameter download link · 52a8b8f3
  Gustaf Ahdritz authored Feb 01, 2022
  
  52a8b8f3
- Update AlphaFold parameter license · 1fd76797
  Gustaf Ahdritz authored Feb 01, 2022
  
  1fd76797
- adding a dockerfile build for openfold, along with a fix to the residue_constraints module · 4f2bc2e8
  Sam DeLuca authored Feb 01, 2022
  
  4f2bc2e8
29 Jan, 2022 1 commit
- Update installation guide in README · 231eb98b
  Gustaf Ahdritz authored Jan 29, 2022
  
  231eb98b
28 Jan, 2022 1 commit
- Remove tiny epsilon from default optimizer · 0067da9f
  Gustaf Ahdritz authored Jan 27, 2022
  
  0067da9f