Commits · 9dee6caaabe4942bf6acf22697ea43a55b96ecf5 · OpenDAS / OpenFold

21 Jun, 2022 11 commits
- Update inference script · 9dee6caa
  Gustaf Ahdritz authored Jun 21, 2022
  
  9dee6caa
- Add better AlphaFold-Gap support to PDB parsing scripts · 7642bef9
  Gustaf Ahdritz authored Jun 21, 2022
  
  7642bef9
- Disable zero centering again · 2549752d
  Gustaf Ahdritz authored Jun 21, 2022
  
  2549752d
- Disable zero centering · 632acfaf
  Gustaf Ahdritz authored Jun 21, 2022
  
  632acfaf
- Move chunking code, add memory optimizations · 5aa21eae
  Gustaf Ahdritz authored Jun 21, 2022
  
  5aa21eae
- Add offloading to evoformer · fe9ad07e
  Gustaf Ahdritz authored Jun 21, 2022
  
  fe9ad07e
- Add offloading to structure module · b40fab25
  Gustaf Ahdritz authored Jun 21, 2022
  
  b40fab25
- Update config with offloading option · 7d9e6830
  Gustaf Ahdritz authored Jun 21, 2022
  
  7d9e6830
- Bump up OpenFold's version number · 887b4a71
  Gustaf Ahdritz authored Jun 21, 2022
  
  887b4a71
- Update README · 84fa8d95
  Gustaf Ahdritz authored Jun 21, 2022
  
  84fa8d95
- Update banner · 3d6d51ce
  Gustaf Ahdritz authored Jun 21, 2022
  
  3d6d51ce
17 Jun, 2022 6 commits
- Scale back chunk size tuning a little · 96ca6460
  Gustaf Ahdritz authored Jun 17, 2022
  
  96ca6460
- Move parameter downloads · f8f74006
  Gustaf Ahdritz authored Jun 17, 2022
  
  f8f74006
- Update link in OpenFold parameter download script · 9d09bdb8
  Gustaf Ahdritz authored Jun 17, 2022
  
  9d09bdb8
- Add OpenFold parameter download script · 233704c5
  Gustaf Ahdritz authored Jun 17, 2022
  
  233704c5
- Update README for release · 666890d2
  Gustaf Ahdritz authored Jun 17, 2022
  
  666890d2
- Add support for public checkpoints · 1921ac99
  Gustaf Ahdritz authored Jun 16, 2022
  
  1921ac99
15 Jun, 2022 3 commits
- Tweak chunk tuning a little · d6b36a80
  Gustaf Ahdritz authored Jun 15, 2022
  
  d6b36a80
- Fix another chunk tuning bug · 29f2ffe0
  Gustaf Ahdritz authored Jun 14, 2022
  
  29f2ffe0
- Fix chunk size tuner bug · b84dd8cb
  Gustaf Ahdritz authored Jun 14, 2022
  
  b84dd8cb
14 Jun, 2022 8 commits
- Remove nonexistent parameter · 4bfd5bf0
  Gustaf Ahdritz authored Jun 14, 2022
  
  4bfd5bf0
- Remove removed function call · ceb95303
  Gustaf Ahdritz authored Jun 14, 2022
  
  ceb95303
- Fix alignment command in README · 82e02065
  Gustaf Ahdritz authored Jun 14, 2022
  
  82e02065
- Clarify training instructions · d90fa5e1
  Gustaf Ahdritz authored Jun 13, 2022
  
  d90fa5e1
- Tweak README wording again · 096c68ea
  Gustaf Ahdritz authored Jun 13, 2022
  
  096c68ea
- Tweak README wording · 8e21f27f
  Gustaf Ahdritz authored Jun 13, 2022
  
  8e21f27f
- Add new inference features to README · ca2e07bf
  Gustaf Ahdritz authored Jun 13, 2022
  
  ca2e07bf
- Improve memory efficiency of structure module · 578541c8
  Gustaf Ahdritz authored Jun 13, 2022
  
  578541c8
12 Jun, 2022 6 commits
- Fix unit test · e9e3fbdc
  Gustaf Ahdritz authored Jun 12, 2022
  
  e9e3fbdc
- Change chunk tuning defaults · 7d442323
  Gustaf Ahdritz authored Jun 12, 2022
  
  7d442323
- Add chunk size tuning · 4c1cf6e2
  Gustaf Ahdritz authored Jun 12, 2022
  
  4c1cf6e2
- Remove redundant checkpoint functions · 8036a213
  Gustaf Ahdritz authored Jun 11, 2022
  
  8036a213
- Fix bug in template code · 5ada323e
  Gustaf Ahdritz authored Jun 11, 2022
  
  5ada323e
- Speed up inference · bebbe782
  Gustaf Ahdritz authored Jun 11, 2022
  
  bebbe782
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
25 May, 2022 5 commits
- Add AlphaFold-Multimer disclaimer · ec5619fc
  Gustaf Ahdritz authored May 25, 2022
  
  ec5619fc
- Add note on AlphaFold-Gap · 064cd20d
  Gustaf Ahdritz authored May 25, 2022
  
  064cd20d
- Fix another undefined reference · a1cf7454
  Gustaf Ahdritz authored May 25, 2022
  
  a1cf7454
- Fix undefined reference · be87500a
  Gustaf Ahdritz authored May 25, 2022
  
  be87500a
- Fix config default · 197029b1
  Gustaf Ahdritz authored May 25, 2022
  
  197029b1