Commits · 939a82c78f3e583a3060daec5010f09b4fc3bc00 · OpenDAS / OpenFold

19 Jul, 2022 8 commits
- Merge pull request #164 from bayer-science-for-a-better-life/fix-multifasta-predictions · 939a82c7
  Gustaf Ahdritz authored Jul 19, 2022
```
Fix tag-sequence mismatch when predicting for multiple fastas
```
  939a82c7
- Merge pull request #166 from josemduarte/download-mgnify-fix · 33f2f8ed
  Gustaf Ahdritz authored Jul 19, 2022
```
Fix for issue in download_mgnify.sh
```
  33f2f8ed
- Make DLLogger less mandatory · 57007a97
  Gustaf Ahdritz authored Jul 19, 2022
  
  57007a97
- Pare down notebook requirements · 7ad80589
  Gustaf Ahdritz authored Jul 19, 2022
  
  7ad80589
- Add notebook-specific environment.yml · 1779d15a
  Gustaf Ahdritz authored Jul 19, 2022
  
  1779d15a
- Add region to aws command · def0727d
  Gustaf Ahdritz authored Jul 19, 2022
  
  def0727d
- Add aws requirement to README · 5739b631
  Gustaf Ahdritz authored Jul 19, 2022
  
  5739b631
- Update OF params · 0933cad1
  Gustaf Ahdritz authored Jul 19, 2022
  
  0933cad1
18 Jul, 2022 1 commit
- Fixing issue in gunzipping · 204d243b
  Jose Duarte authored Jul 18, 2022
  
  204d243b
17 Jul, 2022 1 commit
- Fix notebook · 592bcdd9
  Gustaf Ahdritz authored Jul 17, 2022
  
  592bcdd9
16 Jul, 2022 1 commit
- fix tag-sequence missmatch when predicting for multiple fastas · 88450a67
  Santi Villalba authored Jul 16, 2022
  
  88450a67
15 Jul, 2022 7 commits
- Add note about FlashAttention · 04fd6d34
  Gustaf Ahdritz authored Jul 15, 2022
  
  04fd6d34
- Fix timing in inference script · 4b3a102f
  Gustaf Ahdritz authored Jul 15, 2022
  
  4b3a102f
- Fix notebook again · e6852aee
  Gustaf Ahdritz authored Jul 15, 2022
  
  e6852aee
- Fix notebook · 892adf48
  Gustaf Ahdritz authored Jul 15, 2022
  
  892adf48
- Update README · 4a6c9bf1
  Gustaf Ahdritz authored Jul 15, 2022
  
  4a6c9bf1
- Add libcusolver-dev · 0463665b
  Gustaf Ahdritz authored Jul 15, 2022
  
  0463665b
- Add libcublas installation · af48e5f6
  Gustaf Ahdritz authored Jul 15, 2022
  
  af48e5f6
14 Jul, 2022 6 commits
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 61480c36
  Gustaf Ahdritz authored Jul 14, 2022
  
  61480c36
- Fix cusparse installation · d537f433
  Gustaf Ahdritz authored Jul 14, 2022
  
  d537f433
- Revise FlashAttention section of README · bfa6c7d0
  Gustaf Ahdritz authored Jul 14, 2022
  
  bfa6c7d0
- Attempt to add cusparse installation · 3c93fc40
  Gustaf Ahdritz authored Jul 14, 2022
  
  3c93fc40
- Make FlashAttention installation optional · d07ae9c4
  Gustaf Ahdritz authored Jul 14, 2022
  
  d07ae9c4
- Restore missing shebang · 1c279f90
  Gustaf Ahdritz authored Jul 14, 2022
  
  1c279f90
12 Jul, 2022 2 commits
- Fix .a3m parsing bug · ddd1d79f
  Gustaf Ahdritz authored Jul 12, 2022
  
  ddd1d79f
- Fix seeding bug · 3927776d
  Gustaf Ahdritz authored Jul 11, 2022
  
  3927776d
11 Jul, 2022 7 commits
- Roll back FlashAttention · 10b6afd6
  Gustaf Ahdritz authored Jul 11, 2022
  
  10b6afd6
- Remove unsuccessful Dockerfile experiment · a8e8cfb9
  Gustaf Ahdritz authored Jul 11, 2022
  
  a8e8cfb9
- Another attempt at fixing the Dockerfile · d063e344
  Gustaf Ahdritz authored Jul 11, 2022
  
  d063e344
- Fix typo in Dockerfile · 9e72c740
  Gustaf Ahdritz authored Jul 11, 2022
  
  9e72c740
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 95c79d24
  Gustaf Ahdritz authored Jul 11, 2022
  
  95c79d24
- Dockerfile experiment · 63cf9ef1
  Gustaf Ahdritz authored Jul 11, 2022
  
  63cf9ef1
- Remove redundant(?) cudatoolkit-dev installation · 7a5b5835
  Gustaf Ahdritz authored Jul 11, 2022
  
  7a5b5835
10 Jul, 2022 5 commits
- Make cudatoolkit version more specific · a890b4ad
  Gustaf Ahdritz authored Jul 10, 2022
  
  a890b4ad
- Try adding libxml2 to Dockerfile · 7f785035
  Gustaf Ahdritz authored Jul 10, 2022
  
  7f785035
- Fix typo in Dockerfile · d0f723d3
  Gustaf Ahdritz authored Jul 10, 2022
  
  d0f723d3
- Update Dockerfile CUDA version · f487bb8c
  Gustaf Ahdritz authored Jul 10, 2022
  
  f487bb8c
- Update cudatoolkit version · 5cf99876
  Gustaf Ahdritz authored Jul 10, 2022
  
  5cf99876
08 Jul, 2022 2 commits
- Reword README · 9225f872
  Gustaf Ahdritz authored Jul 08, 2022
  
  9225f872
- Make README claim more specific. · 41297d86
  Gustaf Ahdritz authored Jul 08, 2022
  
  41297d86