Commits · 8f08fbb78dd8076a86eb35cd26acc7ef72085cc3 · OpenDAS / OpenFold

06 Jul, 2023 1 commit
- modify imports and header · 8f08fbb7
  Geoffrey Yu authored Jul 06, 2023
  
  8f08fbb7
30 Jun, 2023 3 commits
- change it back to unittest testunit · 7e969e48
  Geoffrey Yu authored Jun 30, 2023
  
  7e969e48
- update test codes so that it generates correct structure of input data · 1e268fd5
  Geoffrey Yu authored Jun 30, 2023
  
  1e268fd5
- fixed the input data generation so that true_msa and bert_mask shapes are... · 1b4fc115
  Geoffrey Yu authored Jun 30, 2023
```
fixed the input data generation so that true_msa and bert_mask shapes are correct otherwise crashes in loss calculations
```
  1b4fc115
29 Jun, 2023 2 commits
- updated the loss config so that the masked msa dim is 22 instead of 23 · 9ebb1e1a
  Geoffrey Yu authored Jun 29, 2023
  
  9ebb1e1a
- update test code · c8a3f35e
  Geoffrey Yu authored Jun 29, 2023
  
  c8a3f35e
28 Jun, 2023 1 commit
- added batch_size dimension · c69053e5
  Geoffrey Yu authored Jun 28, 2023
  
  c69053e5
26 Jun, 2023 1 commit
- update the test input to be A2B3 · 5621ac05
  Geoffrey Yu authored Jun 26, 2023
  
  5621ac05
24 Jun, 2023 3 commits
- added example label files · a741b42a
  Geoffrey Yu authored Jun 24, 2023
  
  a741b42a
- remove unnecessary extra file · 50abc1a7
  Geoffrey Yu authored Jun 24, 2023
  
  50abc1a7
- revert data_utils and remove all the changes in this file · 85cd91f6
  Geoffrey Yu authored Jun 24, 2023
  
  85cd91f6
22 Jun, 2023 6 commits
- update test codes · ab659c39
  Geoffrey Yu authored Jun 22, 2023
  
  ab659c39
- fixed downstream greedy align · 4a66504c
  Geoffrey Yu authored Jun 22, 2023
  
  4a66504c
- now used the new way of selecting anchors · a0f8a057
  Geoffrey Yu authored Jun 22, 2023
  
  a0f8a057
- finished codes for num_sym 1 · 54755901
  Geoffrey Yu authored Jun 22, 2023
  
  54755901
- fixed get_anchor_candidates error · f563944a
  Geoffrey Yu authored Jun 22, 2023
  
  f563944a
- remove recycling dimentions · c6ac105d
  Geoffrey Yu authored Jun 22, 2023
  
  c6ac105d
21 Jun, 2023 3 commits
- update codes · d3b2b265
  Geoffrey Yu authored Jun 21, 2023
  
  d3b2b265
- fixed the assertion errors in get_optimal_transform · d4b6163d
  Geoffrey Yu authored Jun 21, 2023
  
  d4b6163d
- finished working on selecting best anchors. now start working on get_optimal_transform · e3e8a681
  Geoffrey Yu authored Jun 21, 2023
  
  e3e8a681
20 Jun, 2023 1 commit
- start working on permutation · 1008f61d
  Geoffrey Yu authored Jun 20, 2023
  
  1008f61d
14 Jun, 2023 1 commit
- Added multimer changes for loss functions · 51556d52
  Christina Floristean authored Jun 14, 2023
  
  51556d52
17 Apr, 2023 1 commit
- Multimer v3 updates · 68828c49
  Christina Floristean authored Apr 17, 2023
  
  68828c49
17 Feb, 2023 1 commit
- All non-cuda tests passing for monomer/multimer. Tri mul/attn and OPM order switched. · d8ee9c5f
  Christina Floristean authored Feb 17, 2023
  
  d8ee9c5f
04 Feb, 2023 2 commits
- Remove print statements · 700fe8fe
  Gustaf Ahdritz authored Feb 04, 2023
  
  700fe8fe
- Fix test bugs · e14a313e
  Gustaf Ahdritz authored Feb 04, 2023
  
  e14a313e
23 Jun, 2022 1 commit
- Restore sample feat file · b4b849af
  Gustaf Ahdritz authored Jun 22, 2022
  
  b4b849af
22 Jun, 2022 1 commit
- Fix OPM test · c2f46ce8
  Gustaf Ahdritz authored Jun 22, 2022
  
  c2f46ce8
21 Jun, 2022 1 commit
- wip · fcee03aa
  Sam DeLuca authored Jun 21, 2022
  
  fcee03aa
12 Jun, 2022 1 commit
- Fix unit test · e9e3fbdc
  Gustaf Ahdritz authored Jun 12, 2022
  
  e9e3fbdc
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
13 May, 2022 1 commit
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
26 Apr, 2022 2 commits
- Add type check to attention kernel · 50078a62
  Gustaf Ahdritz authored Apr 26, 2022
  
  50078a62
- Add memory-efficient attention kernels · edb7d341
  Gustaf Ahdritz authored Apr 26, 2022
  
  edb7d341
15 Apr, 2022 1 commit
- Add missing pLDDT test · 8c169fb6
  Gustaf Ahdritz authored Apr 15, 2022
  
  8c169fb6
14 Apr, 2022 1 commit
- Fix evoformer paths in some old tests · 857e9b7c
  Gustaf Ahdritz authored Apr 13, 2022
  
  857e9b7c
03 Feb, 2022 1 commit
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
01 Feb, 2022 1 commit
- Remove unnecessary symlink · fb02f39a
  Gustaf Ahdritz authored Feb 01, 2022
  
  fb02f39a
03 Jan, 2022 1 commit
- Overhaul transformation code for better parity w/ AlphaFold · e3daf724
  Gustaf Ahdritz authored Jan 03, 2022
  
  e3daf724
31 Dec, 2021 1 commit
- Add data pipeline test · 14cce39a
  Gustaf Ahdritz authored Dec 30, 2021
  
  14cce39a