Commits · 8184691b49ca2f5045837b8fdd6510f4ad85349a · OpenDAS / OpenFold

"include/vscode:/vscode.git/clone" did not exist on "fbaedd2d017ca89d1362e54dc1890c4a5f55f240"

20 Jul, 2022 3 commits
- Change seeding · 8184691b
  Gustaf Ahdritz authored Jul 20, 2022
  
  8184691b
- Undo accidental training script change · 47fccce1
  Gustaf Ahdritz authored Jul 20, 2022
  
  47fccce1
- Fix pLDDT bug · 4358096c
  Gustaf Ahdritz authored Jul 20, 2022
  
  4358096c
19 Jul, 2022 21 commits
- Address template edge case · 236c6865
  Gustaf Ahdritz authored Jul 19, 2022
  
  236c6865
- Rename pLDDT loss · b9eede45
  Gustaf Ahdritz authored Jul 19, 2022
  
  b9eede45
- Fix Colab title · a83fcc01
  Gustaf Ahdritz authored Jul 19, 2022
  
  a83fcc01
- Revamp Colab · bbb9c9fd
  Gustaf Ahdritz authored Jul 19, 2022
  
  bbb9c9fd
- Merge pull request #171 from josemduarte/download-uniref-fix · dc4d04c8
  Gustaf Ahdritz authored Jul 19, 2022
```
Fixing issue in download_uniref90.sh
```
  dc4d04c8
- Add missing import · f4b1347b
  Gustaf Ahdritz authored Jul 19, 2022
  
  f4b1347b
- Make DeepSpeed optional · 9b861808
  Gustaf Ahdritz authored Jul 19, 2022
  
  9b861808
- Fixing issue in gunzipping · 55cce52e
  Jose Duarte authored Jul 19, 2022
  
  55cce52e
- Undo last commit · 15b75e49
  Gustaf Ahdritz authored Jul 19, 2022
  
  15b75e49
- Fix imports · f0cce574
  Gustaf Ahdritz authored Jul 19, 2022
  
  f0cce574
- Make Biopython optional · c269978a
  Gustaf Ahdritz authored Jul 19, 2022
  
  c269978a
- Remove pip requirements from setup.py · 68a48604
  Gustaf Ahdritz authored Jul 19, 2022
  
  68a48604
- Merge pull request #163 from bayer-science-for-a-better-life/modernize-mmseqs · 99c080f8
  Gustaf Ahdritz authored Jul 19, 2022
```
Support openmm >= 7.6
```
  99c080f8
- Merge pull request #164 from bayer-science-for-a-better-life/fix-multifasta-predictions · 939a82c7
  Gustaf Ahdritz authored Jul 19, 2022
```
Fix tag-sequence mismatch when predicting for multiple fastas
```
  939a82c7
- Merge pull request #166 from josemduarte/download-mgnify-fix · 33f2f8ed
  Gustaf Ahdritz authored Jul 19, 2022
```
Fix for issue in download_mgnify.sh
```
  33f2f8ed
- Make DLLogger less mandatory · 57007a97
  Gustaf Ahdritz authored Jul 19, 2022
  
  57007a97
- Pare down notebook requirements · 7ad80589
  Gustaf Ahdritz authored Jul 19, 2022
  
  7ad80589
- Add notebook-specific environment.yml · 1779d15a
  Gustaf Ahdritz authored Jul 19, 2022
  
  1779d15a
- Add region to aws command · def0727d
  Gustaf Ahdritz authored Jul 19, 2022
  
  def0727d
- Add aws requirement to README · 5739b631
  Gustaf Ahdritz authored Jul 19, 2022
  
  5739b631
- Update OF params · 0933cad1
  Gustaf Ahdritz authored Jul 19, 2022
  
  0933cad1
18 Jul, 2022 1 commit
- Fixing issue in gunzipping · 204d243b
  Jose Duarte authored Jul 18, 2022
  
  204d243b
17 Jul, 2022 1 commit
- Fix notebook · 592bcdd9
  Gustaf Ahdritz authored Jul 17, 2022
  
  592bcdd9
16 Jul, 2022 2 commits
- fix tag-sequence missmatch when predicting for multiple fastas · 88450a67
  Santi Villalba authored Jul 16, 2022
  
  88450a67
- support openmm >= 7.6 · 67a39939
  Santi Villalba authored Jul 16, 2022
  
  67a39939
15 Jul, 2022 7 commits
- Add note about FlashAttention · 04fd6d34
  Gustaf Ahdritz authored Jul 15, 2022
  
  04fd6d34
- Fix timing in inference script · 4b3a102f
  Gustaf Ahdritz authored Jul 15, 2022
  
  4b3a102f
- Fix notebook again · e6852aee
  Gustaf Ahdritz authored Jul 15, 2022
  
  e6852aee
- Fix notebook · 892adf48
  Gustaf Ahdritz authored Jul 15, 2022
  
  892adf48
- Update README · 4a6c9bf1
  Gustaf Ahdritz authored Jul 15, 2022
  
  4a6c9bf1
- Add libcusolver-dev · 0463665b
  Gustaf Ahdritz authored Jul 15, 2022
  
  0463665b
- Add libcublas installation · af48e5f6
  Gustaf Ahdritz authored Jul 15, 2022
  
  af48e5f6
14 Jul, 2022 5 commits
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 61480c36
  Gustaf Ahdritz authored Jul 14, 2022
  
  61480c36
- Fix cusparse installation · d537f433
  Gustaf Ahdritz authored Jul 14, 2022
  
  d537f433
- Revise FlashAttention section of README · bfa6c7d0
  Gustaf Ahdritz authored Jul 14, 2022
  
  bfa6c7d0
- Attempt to add cusparse installation · 3c93fc40
  Gustaf Ahdritz authored Jul 14, 2022
  
  3c93fc40
- Make FlashAttention installation optional · d07ae9c4
  Gustaf Ahdritz authored Jul 14, 2022
  
  d07ae9c4