Commits · 7fb12cf5cde3cf9b759c224f47aed07a6607d854 · OpenDAS / OpenFold

13 Nov, 2023 1 commit
- Update setup script and refactor qkv prep · 7fb12cf5
  Christina Floristean authored Nov 13, 2023
  
  7fb12cf5
10 Oct, 2023 3 commits
- Added test for no column attention Evoformer · 28334db3
  Sachin Kadyan authored Sep 18, 2023
  
  28334db3
- Added sequence embedding mode test for `model`. · a7c0d0d1
  Sachin Kadyan authored Sep 18, 2023
  
  a7c0d0d1
- Added test for PreembeddingEmbedder · 777d738a
  Sachin Kadyan authored Sep 17, 2023
  
  777d738a
06 Oct, 2023 1 commit
- Added test for backward pass · f545323c
  Christina Floristean authored Oct 06, 2023
  
  f545323c
05 Oct, 2023 1 commit
- Added kernel to template pair stack and updated tests · a3de9cb9
  Christina Floristean authored Oct 05, 2023
  
  a3de9cb9
04 Oct, 2023 1 commit
- Remove scale when using ds kernel · a0985761
  Christina Floristean authored Oct 03, 2023
  
  a0985761
20 Sep, 2023 2 commits
- Adds cuda wrapper to pytorch vectors to fix TestModel.test_dry_run · 8baae516
  Jennifer Wei authored Sep 20, 2023
  
  8baae516
- Correct unit tests to run attention functions instead of Attention module in... · 6ebcd8b4
  Christina Floristean authored Sep 20, 2023
```
Correct unit tests to run attention functions instead of Attention module in order to avoid 'final' init on outputs
```
  6ebcd8b4
18 Sep, 2023 2 commits
- Adds float wrapper to to vectors in TestExtraMSAStack in · 48668ca3
  Jennifer Wei authored Sep 18, 2023
```
 test_evoformer.py
```
  48668ca3
- Update to deepspeed main repo, final changes to tests · 710088d9
  Christina Floristean authored Sep 18, 2023
  
  710088d9
14 Sep, 2023 2 commits
- Fix seq min length issue in kernel test · a8d896fd
  Christina Floristean authored Sep 14, 2023
  
  a8d896fd
- Fix bug in test to enable kernel · e9898a60
  Christina Floristean authored Sep 14, 2023
  
  e9898a60
13 Sep, 2023 1 commit
- Clean up DS kernel integration and test, add cutlass to installation procedure · 2bf18520
  Christina Floristean authored Sep 13, 2023
  
  2bf18520
08 Sep, 2023 1 commit
- Remove AF2 requirement from test · dd944f64
  Christina Floristean authored Sep 07, 2023
  
  dd944f64
07 Sep, 2023 1 commit
- Integrated deepspeed attention kernel and added initial tests. · f0a320e0
  Christina Floristean authored Sep 07, 2023
  
  f0a320e0
24 Jun, 2023 3 commits
- Fix evoformer test · 7fdb503e
  Gustaf Ahdritz authored Jun 24, 2023
  
  7fdb503e
- Fix model test · d5da89c1
  Gustaf Ahdritz authored Jun 24, 2023
  
  d5da89c1
- Fix utils tests · df067065
  Gustaf Ahdritz authored Jun 24, 2023
  
  df067065
04 Feb, 2023 2 commits
- Remove print statements · 700fe8fe
  Gustaf Ahdritz authored Feb 04, 2023
  
  700fe8fe
- Fix test bugs · e14a313e
  Gustaf Ahdritz authored Feb 04, 2023
  
  e14a313e
23 Jun, 2022 1 commit
- Restore sample feat file · b4b849af
  Gustaf Ahdritz authored Jun 22, 2022
  
  b4b849af
22 Jun, 2022 1 commit
- Fix OPM test · c2f46ce8
  Gustaf Ahdritz authored Jun 22, 2022
  
  c2f46ce8
21 Jun, 2022 1 commit
- wip · fcee03aa
  Sam DeLuca authored Jun 21, 2022
  
  fcee03aa
12 Jun, 2022 1 commit
- Fix unit test · e9e3fbdc
  Gustaf Ahdritz authored Jun 12, 2022
  
  e9e3fbdc
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
13 May, 2022 1 commit
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
26 Apr, 2022 2 commits
- Add type check to attention kernel · 50078a62
  Gustaf Ahdritz authored Apr 26, 2022
  
  50078a62
- Add memory-efficient attention kernels · edb7d341
  Gustaf Ahdritz authored Apr 26, 2022
  
  edb7d341
15 Apr, 2022 1 commit
- Add missing pLDDT test · 8c169fb6
  Gustaf Ahdritz authored Apr 15, 2022
  
  8c169fb6
14 Apr, 2022 1 commit
- Fix evoformer paths in some old tests · 857e9b7c
  Gustaf Ahdritz authored Apr 13, 2022
  
  857e9b7c
03 Feb, 2022 1 commit
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
01 Feb, 2022 1 commit
- Remove unnecessary symlink · fb02f39a
  Gustaf Ahdritz authored Feb 01, 2022
  
  fb02f39a
03 Jan, 2022 1 commit
- Overhaul transformation code for better parity w/ AlphaFold · e3daf724
  Gustaf Ahdritz authored Jan 03, 2022
  
  e3daf724
31 Dec, 2021 4 commits
- Add data pipeline test · 14cce39a
  Gustaf Ahdritz authored Dec 30, 2021
  
  14cce39a
- Change name of test data directory · 96809433
  Gustaf Ahdritz authored Dec 30, 2021
  
  96809433
- Add sample feature dict · 079baeb7
  Gustaf Ahdritz authored Dec 30, 2021
  
  079baeb7
- Add more sample data · 85d39c80
  Gustaf Ahdritz authored Dec 30, 2021
  
  85d39c80
30 Dec, 2021 1 commit
- Fix bugs in data unit tests · dfdd722c
  Gustaf Ahdritz authored Dec 30, 2021
  
  dfdd722c
22 Dec, 2021 1 commit
- Added test for make_atom14_masks · e1c7c9e7
  Sachin Kadyan authored Dec 21, 2021
  
  e1c7c9e7