Commits · 7e3cd77f863a14fc954dad6270ee98273fc9e424 · OpenDAS / OpenFold

"vscode:/vscode.git/clone" did not exist on "9e460da23163dffcca007ac8725221257cf36d55"

09 Aug, 2022 2 commits
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 7e3cd77f
  Gustaf Ahdritz authored Aug 09, 2022
  
  7e3cd77f
- Make tracing more granular · a9a12890
  Gustaf Ahdritz authored Aug 09, 2022
  
  a9a12890
08 Aug, 2022 3 commits
- Remove old SLURM stuff · 786afe00
  Gustaf Ahdritz authored Aug 08, 2022
  
  786afe00
- Replace cursed seed · e8b3789f
  Gustaf Ahdritz authored Aug 08, 2022
  
  e8b3789f
- Merge pull request #128 from SauravMaheshkar/patch-1 · 7aa07097
  Gustaf Ahdritz authored Aug 08, 2022
```
Add opencontainers image-spec to `Dockerfile`
```
  7aa07097
07 Aug, 2022 2 commits
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 3fb643e9
  Gustaf Ahdritz authored Aug 07, 2022
  
  3fb643e9
- Force HHSuite symlink · a70132f3
  Gustaf Ahdritz authored Aug 07, 2022
  
  a70132f3
06 Aug, 2022 1 commit
- Update early stopping callback · b9b8c0a5
  Gustaf Ahdritz authored Aug 06, 2022
  
  b9b8c0a5
05 Aug, 2022 1 commit
- Add long sequence inference preset · e49c6dc7
  Gustaf Ahdritz authored Aug 05, 2022
  
  e49c6dc7
04 Aug, 2022 3 commits
- Attempt to fix FlashAttention installation error · 14a79a12
  Gustaf Ahdritz authored Aug 04, 2022
  
  14a79a12
- Remove print statement · ef239f30
  Gustaf Ahdritz authored Aug 04, 2022
  
  ef239f30
- Add more compute capabilities to default list · f3814c9c
  Gustaf Ahdritz authored Aug 04, 2022
  
  f3814c9c
03 Aug, 2022 8 commits
- Fix another error message error · d45bd7cc
  Gustaf Ahdritz authored Aug 03, 2022
  
  d45bd7cc
- Fix error messages in CUDA script · bd4a9d7e
  Gustaf Ahdritz authored Aug 03, 2022
  
  bd4a9d7e
- Attempt to fix Dockerfile kernel compilation · a5f7ec8e
  Gustaf Ahdritz authored Aug 03, 2022
  
  a5f7ec8e
- Attempt to fix Dockerfile kernel compilation · a6c78775
  Gustaf Ahdritz authored Aug 03, 2022
  
  a6c78775
- Remove print statement · f3738700
  Gustaf Ahdritz authored Aug 03, 2022
  
  f3738700
- Remove error in new CC function · 6c89015d
  Gustaf Ahdritz authored Aug 03, 2022
  
  6c89015d
- Fix typo · 1c64c791
  Gustaf Ahdritz authored Aug 03, 2022
  
  1c64c791
- Fix kernel installation bug · 20fbe840
  Gustaf Ahdritz authored Aug 03, 2022
  
  20fbe840
02 Aug, 2022 11 commits
- Merge pull request #182 from Zhang690683220/fix · 87f3cd45
  Gustaf Ahdritz authored Aug 02, 2022
```
fix incorrect learning rate warm-up after restarting from ckpt
```
  87f3cd45
- fix lr resume for non-deepspeed ckpts · a2e7dabb
  Zhang690683220 authored Aug 02, 2022
  
  a2e7dabb
- Merge pull request #188 from NZ99/patch-2 · 2648f26a
  Gustaf Ahdritz authored Aug 02, 2022
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Fixes errors when processing .pdb files
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  2648f26a
- Fixes errors when processing .pdb files · d7d95e94
  Niccolò Zanichelli authored Aug 02, 2022
```
Fixes #187.
```
  d7d95e94
- Add argument check to CAMEO script · a44bbebb
  Gustaf Ahdritz authored Aug 01, 2022
  
  a44bbebb
- Add CAMEO link · b18026fd
  Gustaf Ahdritz authored Aug 01, 2022
  
  b18026fd
- Remove assumption that checkpoint is a directory · 581d64f2
  Gustaf Ahdritz authored Aug 01, 2022
  
  581d64f2
- Improve validation set instructions · 5fecb921
  Gustaf Ahdritz authored Aug 01, 2022
  
  5fecb921
- Fix argparse bug · 904de71f
  Gustaf Ahdritz authored Aug 01, 2022
  
  904de71f
- Merge pull request #185 from NZ99/patch-1 · b0313688
  Gustaf Ahdritz authored Aug 01, 2022
```
Update deepspeed version to 0.5.10
```
  b0313688
- Improve validation download script · 3ced7cf2
  Gustaf Ahdritz authored Aug 01, 2022
  
  3ced7cf2
31 Jul, 2022 1 commit
- Update deepspeed version to 0.5.10 · 60aad360
  Niccolò Zanichelli authored Jul 31, 2022
```
Fixes https://github.com/aqlaboratory/openfold/issues/184.
```
  60aad360
30 Jul, 2022 3 commits
- add the missing resume_last_lr_step() · 69a8a287
  Zhang690683220 authored Jul 29, 2022
  
  69a8a287
- Speed up dataset filtering · 200d9517
  Gustaf Ahdritz authored Jul 29, 2022
  
  200d9517
- Fix sample training command · d96f27b1
  Gustaf Ahdritz authored Jul 29, 2022
  
  d96f27b1
29 Jul, 2022 5 commits
- fix incorrect learning rate warm-up after restarting from ckpt · a7274ef0
  Zhang690683220 authored Jul 29, 2022
  
  a7274ef0
- Fix sample training command · ce2e1f29
  Gustaf Ahdritz authored Jul 29, 2022
  
  ce2e1f29
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · f3087e31
  Gustaf Ahdritz authored Jul 29, 2022
  
  f3087e31
- Reenable chunk size tuning · a89d43e4
  Gustaf Ahdritz authored Jul 29, 2022
  
  a89d43e4
- Fix config setting bug in inference script · ecd5a7ed
  Gustaf Ahdritz authored Jul 29, 2022
  
  ecd5a7ed