Commits · 748a8c50577c25e292f0c8523590f1b18be5ded6 · OpenDAS / OpenFold

"classification/configs/accelerate/vscode:/vscode.git/clone" did not exist on "41b18fd85f20a4f85c0a1e6b1d5f97303aab1800"

22 Oct, 2021 10 commits
- Add DeepSpeed check to checkpointing function · 748a8c50
  Gustaf Ahdritz authored Oct 22, 2021
  
  748a8c50
- Add dummy dataloader, most recent version of training script · fcf9e2f8
  Gustaf Ahdritz authored Oct 22, 2021
  
  fcf9e2f8
- Fix grammar mistake · 6dc8aa7f
  Gustaf Ahdritz authored Oct 21, 2021
  
  6dc8aa7f
- Add gradient clipping to DeepSpeed config generator · 872787b9
  Gustaf Ahdritz authored Oct 21, 2021
  
  872787b9
- Add some more dependencies · ac058f54
  Gustaf Ahdritz authored Oct 21, 2021
  
  ac058f54
- Fix typo in README · 8cb569f2
  Gustaf Ahdritz authored Oct 21, 2021
  
  8cb569f2
- Reformat README again · 01ad794b
  Gustaf Ahdritz authored Oct 21, 2021
  
  01ad794b
- Reformat README · 621b3645
  Gustaf Ahdritz authored Oct 21, 2021
  
  621b3645
- Update documentation · bd0c4d48
  Gustaf Ahdritz authored Oct 21, 2021
  
  bd0c4d48
- Add Colab notebook · 2d6ef1fb
  Gustaf Ahdritz authored Oct 21, 2021
  
  2d6ef1fb
21 Oct, 2021 4 commits
- Fix another inference-time data parser bug · c58f3cd8
  Gustaf Ahdritz authored Oct 20, 2021
  
  c58f3cd8
- Fix inference-time bug in data pipeline, change config defaults · d65b76a2
  Gustaf Ahdritz authored Oct 20, 2021
  
  d65b76a2
- Fix typo · 13290527
  Gustaf Ahdritz authored Oct 20, 2021
  
  13290527
- Remove dependency on training-time feature · bf3eed6e
  Gustaf Ahdritz authored Oct 20, 2021
  
  bf3eed6e
20 Oct, 2021 7 commits
- Add warning to run script · 267b1bfd
  Gustaf Ahdritz authored Oct 20, 2021
  
  267b1bfd
- Add testing instructions to README · a3a27143
  Gustaf Ahdritz authored Oct 20, 2021
  
  a3a27143
- Move template pair stack out of single-template block (for DeepSpeed) · aea444ed
  Gustaf Ahdritz authored Oct 20, 2021
  
  aea444ed
- Remove .item() calls · 896f8935
  Gustaf Ahdritz authored Oct 20, 2021
  
  896f8935
- Update EMA · 1dcff6aa
  Gustaf Ahdritz authored Oct 19, 2021
  
  1dcff6aa
- Fix loss bug · 12aa565e
  Gustaf Ahdritz authored Oct 19, 2021
  
  12aa565e
- Bring tests up to speed · 49767099
  Gustaf Ahdritz authored Oct 19, 2021
  
  49767099
19 Oct, 2021 2 commits
- Prettyprint mmCIF cache · a6f56d16
  Gustaf Ahdritz authored Oct 19, 2021
  
  a6f56d16
- Fix typo in feature name · 5d449184
  Gustaf Ahdritz authored Oct 19, 2021
  
  5d449184
18 Oct, 2021 4 commits
- Add mmCIF cache generation script, remove verbose warnings · 23886619
  Gustaf Ahdritz authored Oct 18, 2021
  
  23886619
- Fix cropping bug · f649cccd
  Gustaf Ahdritz authored Oct 17, 2021
  
  f649cccd
- Add config change to run script · 4ab59433
  Gustaf Ahdritz authored Oct 17, 2021
  
  4ab59433
- Make chunk size more flexible, reduce verbosity · b026de28
  Gustaf Ahdritz authored Oct 17, 2021
  
  b026de28
17 Oct, 2021 1 commit
- Refactor data pipeline; add distillation parsing · a59ae7c1
  Gustaf Ahdritz authored Oct 17, 2021
  
  a59ae7c1
16 Oct, 2021 2 commits
- Standardize code style · 07e64267
  Gustaf Ahdritz authored Oct 16, 2021
  
  07e64267
- Restore missing license notices · de07730f
  Gustaf Ahdritz authored Oct 16, 2021
  
  de07730f
15 Oct, 2021 2 commits
- Fix faulty symlink command in install script · 5497655c
  Gustaf Ahdritz authored Oct 15, 2021
  
  5497655c
- Add training parsers · d48c052c
  Gustaf Ahdritz authored Oct 15, 2021
  
  d48c052c
12 Oct, 2021 7 commits
- Exclude tests and scripts from import · eeda001c
  Gustaf Ahdritz authored Oct 12, 2021
  
  eeda001c
- Add sample DeepSpeed config · 8bbe9e5a
  Gustaf Ahdritz authored Oct 12, 2021
  
  8bbe9e5a
- Reformat README, require run script option · 29315bdc
  Gustaf Ahdritz authored Oct 11, 2021
  
  29315bdc
- Rename runner, update command in README · 1b802b29
  Gustaf Ahdritz authored Oct 11, 2021
  
  1b802b29
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · 911795ca
  Gustaf Ahdritz authored Oct 11, 2021
  
  911795ca
- Refactor run script (WIP) · 9b60d737
  Gustaf Ahdritz authored Oct 11, 2021
  
  9b60d737
- Fix TM calculation bugs · 71189e20
  Gustaf Ahdritz authored Oct 11, 2021
  
  71189e20
10 Oct, 2021 1 commit
- Rename run script parameter · 376c60c7
  Gustaf Ahdritz authored Oct 10, 2021
  
  376c60c7