Commits · 71fabe1e3b3262ebfbc755dddd3bfcfb62946ee8 · OpenDAS / OpenFold

10 Dec, 2021 3 commits
- Fix mmseqs script bug · 71fabe1e
  Gustaf Ahdritz authored Dec 10, 2021
  
  71fabe1e
- Added tests for the data_transforms · f9e04aa0
  Sachin Kadyan authored Dec 10, 2021
  
  f9e04aa0
- Made initialization consistent for template_featurizer in all modules. · ddf922df
  Sachin Kadyan authored Dec 10, 2021
```
Added obsolete_pdbs_file and release_dates_path in all initialization points.
```
  ddf922df
09 Dec, 2021 1 commit
- Fix validation bugs · 2abd8c1d
  Gustaf Ahdritz authored Dec 09, 2021
  
  2abd8c1d
03 Dec, 2021 4 commits
- Remove unexpected indent · 11cf28f7
  Gustaf Ahdritz authored Dec 02, 2021
  
  11cf28f7
- Add non-distillation PDB option to data module · 56632d44
  Gustaf Ahdritz authored Dec 02, 2021
  
  56632d44
- Add flat chunk slicing · f707a9ea
  Gustaf Ahdritz authored Dec 02, 2021
  
  f707a9ea
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · ebcbaa60
  Gustaf Ahdritz authored Dec 02, 2021
  
  ebcbaa60
02 Dec, 2021 1 commit
- Update README.md · b2310ea6
  Gustaf Ahdritz authored Dec 02, 2021
  
  b2310ea6
30 Nov, 2021 5 commits
- Fix datatypes in PDB parsing · e0c7d445
  Gustaf Ahdritz authored Nov 30, 2021
  
  e0c7d445
- Add option to select chains in PDB files · 699f23fd
  Gustaf Ahdritz authored Nov 30, 2021
  
  699f23fd
- Add non-distillation PDB parsing · 5161c0f6
  Gustaf Ahdritz authored Nov 30, 2021
  
  5161c0f6
- Merge pull request #24 from yuzhiguo07/patch-1 · 57720ec7
  Gustaf Ahdritz authored Nov 29, 2021
```
Update precompute_alignments_mmseqs.py
```
  57720ec7
- Add bfloat16 support to DeepSpeed config script · ca810168
  Gustaf Ahdritz authored Nov 29, 2021
  
  ca810168
29 Nov, 2021 4 commits
- Describe bfloat16 support in README · 90ce2be9
  Gustaf Ahdritz authored Nov 29, 2021
  
  90ce2be9
- Add bfloat16 training option · 29be56e5
  Gustaf Ahdritz authored Nov 29, 2021
  
  29be56e5
- Update precompute_alignments_mmseqs.py · 1bfb1e1b
  yuzhiguo07 authored Nov 29, 2021
  
  1bfb1e1b
- Fix bugs in MMseqs DB script · 78e79962
  Gustaf Ahdritz authored Nov 29, 2021
  
  78e79962
26 Nov, 2021 4 commits
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · fdf836f1
  Gustaf Ahdritz authored Nov 25, 2021
  
  fdf836f1
- Remove vestigial comment · 1d68bde1
  Gustaf Ahdritz authored Nov 25, 2021
  
  1d68bde1
- Fix no-GPU behavior · f3f224a9
  Gustaf Ahdritz authored Nov 25, 2021
  
  f3f224a9
- Add numpy version of DRMSD function · 33b0a9df
  Gustaf Ahdritz authored Nov 25, 2021
  
  33b0a9df
25 Nov, 2021 4 commits
- Remove redundant parameter · a411888a
  Gustaf Ahdritz authored Nov 25, 2021
  
  a411888a
- Fix bug in inference script weight importing · 341ff3d9
  Gustaf Ahdritz authored Nov 25, 2021
  
  341ff3d9
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · 6448d57c
  Gustaf Ahdritz authored Nov 24, 2021
  
  6448d57c
- Fix .core parsing bug · 6133ea95
  Gustaf Ahdritz authored Nov 24, 2021
  
  6133ea95
24 Nov, 2021 9 commits
- Update README.md · 790b0b5c
  Gustaf Ahdritz authored Nov 24, 2021
  
  790b0b5c
- Improve citation formatting · ef29951c
  Gustaf Ahdritz authored Nov 24, 2021
  
  ef29951c
- Remove version number from CITATION.cff · 965af0b3
  Gustaf Ahdritz authored Nov 24, 2021
  
  965af0b3
- Add some ORCID IDs · 7b02d1a4
  Gustaf Ahdritz authored Nov 24, 2021
  
  7b02d1a4
- Add CITATION.cff · 8320e13a
  Gustaf Ahdritz authored Nov 24, 2021
  
  8320e13a
- Expand citation section · 99040ee6
  Gustaf Ahdritz authored Nov 24, 2021
  
  99040ee6
- Update Zenodo link · f0c898b8
  Gustaf Ahdritz authored Nov 24, 2021
  
  f0c898b8
- Add sample citation · ae546bbf
  Gustaf Ahdritz authored Nov 24, 2021
  
  ae546bbf
- Add DOI · fd34b155
  Gustaf Ahdritz authored Nov 24, 2021
  
  fd34b155
23 Nov, 2021 2 commits
- Fix distillation bug · 79f9f03d
  Gustaf Ahdritz authored Nov 23, 2021
  
  79f9f03d
- Remove redundancy in data_transforms · b32bfeec
  Gustaf Ahdritz authored Nov 23, 2021
  
  b32bfeec
22 Nov, 2021 3 commits
- Delete .dockerignore · 03bb003a
  Gustaf Ahdritz authored Nov 22, 2021
  
  03bb003a
- Delete Dockerfile · 4ff033db
  Gustaf Ahdritz authored Nov 22, 2021
  
  4ff033db
- Add alternative fasta file extension · 52800ff0
  Gustaf Ahdritz authored Nov 22, 2021
  
  52800ff0