Commits · 710088d92d1dca06c378c8c3b956db470db8f316 · OpenDAS / OpenFold

18 Sep, 2023 1 commit
- Update to deepspeed main repo, final changes to tests · 710088d9
  Christina Floristean authored Sep 18, 2023
  
  710088d9
14 Sep, 2023 4 commits
- Fix seq min length issue in kernel test · a8d896fd
  Christina Floristean authored Sep 14, 2023
  
  a8d896fd
- Fix bug in test to enable kernel · e9898a60
  Christina Floristean authored Sep 14, 2023
  
  e9898a60
- Update kernel description in README · a4fbd978
  Christina Floristean authored Sep 14, 2023
  
  a4fbd978
- Minor refactoring of ds kernel integration · eb608db9
  Christina Floristean authored Sep 13, 2023
  
  eb608db9
13 Sep, 2023 2 commits
- Add kernel as new feature in README · 0a6230a3
  Christina Floristean authored Sep 13, 2023
  
  0a6230a3
- Clean up DS kernel integration and test, add cutlass to installation procedure · 2bf18520
  Christina Floristean authored Sep 13, 2023
  
  2bf18520
08 Sep, 2023 2 commits
- Convert back to AF2 scheduler/optimizer in deepspeed config · a6703606
  Christina Floristean authored Sep 08, 2023
  
  a6703606
- Remove AF2 requirement from test · dd944f64
  Christina Floristean authored Sep 07, 2023
  
  dd944f64
07 Sep, 2023 1 commit
- Integrated deepspeed attention kernel and added initial tests. · f0a320e0
  Christina Floristean authored Sep 07, 2023
  
  f0a320e0
14 Aug, 2023 1 commit
- Update BibTeX · 2134cc09
  Gustaf Ahdritz authored Aug 14, 2023
  
  2134cc09
09 Aug, 2023 4 commits
- Additional changes to seeding · 1dc2748c
  Christina Floristean authored Aug 09, 2023
  
  1dc2748c
- Make seeding more consistent · 39d0ef43
  Gustaf Ahdritz authored Aug 09, 2023
  
  39d0ef43
- Fix another seeding bug · 410e1829
  Gustaf Ahdritz authored Aug 09, 2023
  
  410e1829
- Fix seeding bug · 451642c8
  Gustaf Ahdritz authored Aug 09, 2023
  
  451642c8
07 Jul, 2023 1 commit
- Fix assert bug · 1d878a12
  Gustaf Ahdritz authored Jul 07, 2023
  
  1d878a12
24 Jun, 2023 3 commits
- Fix evoformer test · 7fdb503e
  Gustaf Ahdritz authored Jun 24, 2023
  
  7fdb503e
- Fix model test · d5da89c1
  Gustaf Ahdritz authored Jun 24, 2023
  
  d5da89c1
- Fix utils tests · df067065
  Gustaf Ahdritz authored Jun 24, 2023
  
  df067065
15 Jun, 2023 1 commit
- Fix batched finetuning bugs · 55003f16
  Gustaf Ahdritz authored Jun 14, 2023
  
  55003f16
18 May, 2023 2 commits
- Merge pull request #320 from vaclavhanzl/fix-colab-conda-all-together · 103d0370
  Gustaf Ahdritz authored May 18, 2023
```
Fix Colab: Install all conda packages together
```
  103d0370
- Fix Colab: Install all conda packages together · 410e8294
  Vaclav Hanzl authored May 18, 2023
```
Later on the conda setup is likely broken by pip.
```
  410e8294
17 May, 2023 2 commits
- Merge pull request #308 from vaclavhanzl/colab-add-dep-fix-python-version · 1f9270cb
  Gustaf Ahdritz authored May 17, 2023
```
Fix Colab again after ModelCIF merge and python version change in Colab
```
  1f9270cb
- Merge pull request #314 from luwei0917/patch-1 · cc1f8baa
  Gustaf Ahdritz authored May 17, 2023
```
Add comment about the interpretation of ambiguous atoms
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  cc1f8baa
16 May, 2023 1 commit
- Null change just to re-run integration test · 35b1c4e1
  Vaclav Hanzl authored May 16, 2023
```
Sorry, I have no other way to re-run the Docker build test.
Changed one space.
```
  35b1c4e1
15 May, 2023 1 commit
- Merge pull request #309 from vaclavhanzl/fix-docker-use-python3-9 · d5354830
  Christina Floristean authored May 15, 2023
```
Advance python version to 3.9 to build docker in Ubuntu Lunar Lobster
```
  d5354830
13 May, 2023 2 commits
- Standardize if condition · 5484c381
  Gustaf Ahdritz authored May 13, 2023
  
  5484c381
- Prevent division by 0 · c52d262c
  Gustaf Ahdritz authored May 13, 2023
  
  c52d262c
09 May, 2023 1 commit
- Update openmm to 7.7.0, patch not needed anymore, update pdbfixer · 71d7bd5d
  Vaclav Hanzl authored May 09, 2023
  
  71d7bd5d
05 May, 2023 1 commit
- add comment about the interpretation of ambiguous atoms · 8d4d8636
  Wei Lu （陆威） authored May 05, 2023
  
  8d4d8636
26 Apr, 2023 1 commit
- Advance python version to 3.9 to build docker in Ubuntu Lunar Lobster · 942f4d6e
  Vaclav Hanzl authored Apr 26, 2023
  
  942f4d6e
25 Apr, 2023 4 commits
- Improve notebook: Automate tracking of the python version in Colab · 8b36691f
  Vaclav Hanzl authored Apr 25, 2023
  
  8b36691f
- Make recently new cif_output arguments optional, do not break existing code · feb99932
  Vaclav Hanzl authored Apr 25, 2023
```
Colab notbook was broken by this change and potentially code of other users
as well. Keep backward compatibility by also allowing the old way.
```
  feb99932
- Fix notebook: Colab now has python 3.9, bump it in our tricks · b95099bb
  Vaclav Hanzl authored Apr 25, 2023
  
  b95099bb
- Fix notebook: Add new modelcif dependency · 5700d8ca
  Vaclav Hanzl authored Apr 25, 2023
  
  5700d8ca
20 Apr, 2023 1 commit
- Remove comment · b5fa2ba3
  Gustaf Ahdritz authored Apr 20, 2023
  
  b5fa2ba3
15 Apr, 2023 1 commit
- Remove misleading link · c8b98f54
  Gustaf Ahdritz authored Apr 15, 2023
  
  c8b98f54
10 Apr, 2023 3 commits
- Fix spacing issue · c21e5e7a
  Gustaf Ahdritz authored Apr 10, 2023
  
  c21e5e7a
- Merge pull request #295 from nikitos9000/improve_fp16_stability · 208cce65
  Gustaf Ahdritz authored Apr 10, 2023
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Improve TriangularMultiplicativeUpdate stability in fp16 mode
```
  208cce65
- Remove comment · ee5d2c35
  Gustaf Ahdritz authored Apr 10, 2023
  
  ee5d2c35