Commits · 5ada323e76616a22a68358502e3bbb4735192ffa · OpenDAS / OpenFold

12 Jun, 2022 2 commits
- Fix bug in template code · 5ada323e
  Gustaf Ahdritz authored Jun 11, 2022
  
  5ada323e
- Speed up inference · bebbe782
  Gustaf Ahdritz authored Jun 11, 2022
  
  bebbe782
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
25 May, 2022 9 commits
- Add AlphaFold-Multimer disclaimer · ec5619fc
  Gustaf Ahdritz authored May 25, 2022
  
  ec5619fc
- Add note on AlphaFold-Gap · 064cd20d
  Gustaf Ahdritz authored May 25, 2022
  
  064cd20d
- Fix another undefined reference · a1cf7454
  Gustaf Ahdritz authored May 25, 2022
  
  a1cf7454
- Fix undefined reference · be87500a
  Gustaf Ahdritz authored May 25, 2022
  
  be87500a
- Fix config default · 197029b1
  Gustaf Ahdritz authored May 25, 2022
  
  197029b1
- Add AlphaFold-Gap inference · f4043e1c
  Gustaf Ahdritz authored May 25, 2022
  
  f4043e1c
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 89f05497
  Gustaf Ahdritz authored May 25, 2022
  
  89f05497
- Never checkpoint with grad disabled · a14e8360
  Gustaf Ahdritz authored May 25, 2022
  
  a14e8360
- Avoid calling the checkpointing function with grad disabled · 67e34d92
  Gustaf Ahdritz authored May 25, 2022
  
  67e34d92
13 May, 2022 5 commits
- Update pretrained script usage notes · 24118e80
  Gustaf Ahdritz authored May 13, 2022
  
  24118e80
- Add LMA writeup · c290ff87
  Gustaf Ahdritz authored May 12, 2022
  
  c290ff87
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 1fc3ca2e
  Gustaf Ahdritz authored May 12, 2022
  
  1fc3ca2e
- Update inference script usage example · e4b701f0
  Gustaf Ahdritz authored May 12, 2022
  
  e4b701f0
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
11 May, 2022 1 commit
- Fix typo · a5df96c3
  Gustaf Ahdritz authored May 10, 2022
  
  a5df96c3
10 May, 2022 1 commit
- Bullet README · 237e26c4
  Gustaf Ahdritz authored May 10, 2022
  
  237e26c4
09 May, 2022 3 commits
- Trim OpenFoldBatchCollator · c4a4df22
  Gustaf Ahdritz authored May 09, 2022
  
  c4a4df22
- Merge pull request #101 from CyrusBiotechnology/fix-docker-keys · 954ed3d3
  Gustaf Ahdritz authored May 09, 2022
```
add correct GPG key to dockerfile
```
  954ed3d3
- add correct GPG key to dockerfile · fdec6ef5
  Sam DeLuca authored May 09, 2022
  
  fdec6ef5
07 May, 2022 4 commits
- Add shape assertion to rotation code · cd41d73f
  Gustaf Ahdritz authored May 07, 2022
  
  cd41d73f
- Further simplify rotation multiplication code · 253aff64
  Gustaf Ahdritz authored May 07, 2022
  
  253aff64
- Simplify rotation multiplication code · 4e9f7a9d
  Gustaf Ahdritz authored May 07, 2022
  
  4e9f7a9d
- Remove redundant condition · 1eb4fcdd
  Gustaf Ahdritz authored May 07, 2022
  
  1eb4fcdd
28 Apr, 2022 12 commits
- Fix bug in MSA chunking code · 576174f0
  Gustaf Ahdritz authored Apr 28, 2022
  
  576174f0
- Dockerfile CUDA compilation round 10 · de60b410
  Gustaf Ahdritz authored Apr 27, 2022
  
  de60b410
- Dockerfile CUDA compilation round 9 · 3f6b73b3
  Gustaf Ahdritz authored Apr 27, 2022
  
  3f6b73b3
- Dockerfile CUDA compilation round 8 · f2409669
  Gustaf Ahdritz authored Apr 27, 2022
  
  f2409669
- Dockerfile CUDA compilation round 7 · fa961fa0
  Gustaf Ahdritz authored Apr 27, 2022
  
  fa961fa0
- Dockerfile CUDA compilation round 6 · 10776442
  Gustaf Ahdritz authored Apr 27, 2022
  
  10776442
- Dockerfile CUDA compilation round 5 · 165603f1
  Gustaf Ahdritz authored Apr 27, 2022
  
  165603f1
- Dockerfile CUDA compilation round 4 · e9b75b2d
  Gustaf Ahdritz authored Apr 27, 2022
  
  e9b75b2d
- Dockerfile CUDA compilation round 3 · 9fa79bd0
  Gustaf Ahdritz authored Apr 27, 2022
  
  9fa79bd0
- Dockerfile CUDA compilation round 2 · 453c90ae
  Gustaf Ahdritz authored Apr 27, 2022
  
  453c90ae
- Test Dockerfile CUDA compilation · 23c69cbf
  Gustaf Ahdritz authored Apr 27, 2022
  
  23c69cbf
- Fix validation metric bugs · 78567a86
  Gustaf Ahdritz authored Apr 27, 2022
  
  78567a86
26 Apr, 2022 2 commits
- Update environment.yml · e1796607
  Gustaf Ahdritz authored Apr 26, 2022
  
  e1796607
- Add type check to attention kernel · 50078a62
  Gustaf Ahdritz authored Apr 26, 2022
  
  50078a62