Commits · 427a6ee754ccc53fa6dd30042b6a9a8d64ed3a5f · OpenDAS / OpenFold

23 Jan, 2024 1 commit
- update deprecated jax.numpy.DeviceArray to jax.Array · 427a6ee7
  Jennifer authored Jan 23, 2024
  
  427a6ee7
17 Jan, 2024 1 commit
- Fix deepspeed test for multimer · 9a07b7f9
  Christina Floristean authored Jan 17, 2024
  
  9a07b7f9
11 Jan, 2024 1 commit
- Change test_compare_model in deepspeed test to use mean instead of max · 39f9958b
  jnwei authored Jan 11, 2024
  
  39f9958b
15 Dec, 2023 1 commit
- Fix missing import in tests · 9d6127cb
  Christina Floristean authored Dec 15, 2023
  
  9d6127cb
08 Dec, 2023 2 commits
- Minor change to tests · 40d76358
  Christina Floristean authored Dec 08, 2023
  
  40d76358
- Minor test and README changes · 336c899a
  Christina Floristean authored Dec 08, 2023
  
  336c899a
13 Nov, 2023 2 commits
- Minor test fix · f1563999
  Christina Floristean authored Nov 13, 2023
  
  f1563999
- Update setup script and refactor qkv prep · 7fb12cf5
  Christina Floristean authored Nov 13, 2023
  
  7fb12cf5
03 Nov, 2023 1 commit
- Fix for loading old OF weights into refactored model · f65b75fe
  Christina Floristean authored Nov 03, 2023
  
  f65b75fe
02 Nov, 2023 1 commit
- Unit test fixes for when AF2 is not installed · 5fcd6ed2
  Christina Floristean authored Nov 02, 2023
  
  5fcd6ed2
10 Oct, 2023 3 commits
- Added test for no column attention Evoformer · 28334db3
  Sachin Kadyan authored Sep 18, 2023
  
  28334db3
- Added sequence embedding mode test for `model`. · a7c0d0d1
  Sachin Kadyan authored Sep 18, 2023
  
  a7c0d0d1
- Added test for PreembeddingEmbedder · 777d738a
  Sachin Kadyan authored Sep 17, 2023
  
  777d738a
06 Oct, 2023 1 commit
- Added test for backward pass · f545323c
  Christina Floristean authored Oct 06, 2023
  
  f545323c
05 Oct, 2023 1 commit
- Added kernel to template pair stack and updated tests · a3de9cb9
  Christina Floristean authored Oct 05, 2023
  
  a3de9cb9
04 Oct, 2023 1 commit
- Remove scale when using ds kernel · a0985761
  Christina Floristean authored Oct 03, 2023
  
  a0985761
21 Sep, 2023 1 commit
- fixed error with anchor selections; updated permutation unittest · f3c1af45
  Geoffrey Yu authored Sep 21, 2023
  
  f3c1af45
20 Sep, 2023 2 commits
- Adds cuda wrapper to pytorch vectors to fix TestModel.test_dry_run · 8baae516
  Jennifer Wei authored Sep 20, 2023
  
  8baae516
- Correct unit tests to run attention functions instead of Attention module in... · 6ebcd8b4
  Christina Floristean authored Sep 20, 2023
```
Correct unit tests to run attention functions instead of Attention module in order to avoid 'final' init on outputs
```
  6ebcd8b4
18 Sep, 2023 2 commits
- Adds float wrapper to to vectors in TestExtraMSAStack in · 48668ca3
  Jennifer Wei authored Sep 18, 2023
```
 test_evoformer.py
```
  48668ca3
- Update to deepspeed main repo, final changes to tests · 710088d9
  Christina Floristean authored Sep 18, 2023
  
  710088d9
14 Sep, 2023 2 commits
- Fix seq min length issue in kernel test · a8d896fd
  Christina Floristean authored Sep 14, 2023
  
  a8d896fd
- Fix bug in test to enable kernel · e9898a60
  Christina Floristean authored Sep 14, 2023
  
  e9898a60
13 Sep, 2023 1 commit
- Clean up DS kernel integration and test, add cutlass to installation procedure · 2bf18520
  Christina Floristean authored Sep 13, 2023
  
  2bf18520
08 Sep, 2023 1 commit
- Remove AF2 requirement from test · dd944f64
  Christina Floristean authored Sep 07, 2023
  
  dd944f64
07 Sep, 2023 1 commit
- Integrated deepspeed attention kernel and added initial tests. · f0a320e0
  Christina Floristean authored Sep 07, 2023
  
  f0a320e0
03 Sep, 2023 2 commits
- added test3 to test if permutated tensors end up as expected · cec5a426
  Geoffrey Yu authored Sep 03, 2023
  
  cec5a426
- update permutation unittest · c5f16efc
  Geoffrey Yu authored Sep 03, 2023
  
  c5f16efc
10 Aug, 2023 1 commit
- Minor model test fix · 3de188e9
  Christina Floristean authored Aug 10, 2023
  
  3de188e9
04 Aug, 2023 3 commits
- remove unfinished test file · e84df271
  Geoffrey Yu authored Aug 04, 2023
  
  e84df271
- fixed TypeError: enabled must be a bool (got Tensor) when training multimer · d7f3d622
  Geoffrey Yu authored Aug 04, 2023
  
  d7f3d622
- Refactored multimer config update · 82bda2d6
  Christina Floristean authored Aug 03, 2023
  
  82bda2d6
03 Aug, 2023 4 commits
- Minor fixes/reformatting for recent multimer training PR · 30764cf9
  Christina Floristean authored Aug 03, 2023
  
  30764cf9
- update train_mmcifs_cache so that now only use one structure for testing · e963726b
  Geoffrey Yu authored Aug 03, 2023
  
  e963726b
- removed old data and script for permutation unittest. now working on the new permutation unittest · 139ea9a6
  Geoffrey Yu authored Aug 03, 2023
  
  139ea9a6
- removed unused alignment files · e2193f77
  Geoffrey Yu authored Aug 03, 2023
  
  e2193f77
02 Aug, 2023 1 commit
- Bug fixes for multimer inference and monomer training · fdcb72e8
  Christina Floristean authored Aug 02, 2023
  
  fdcb72e8
21 Jul, 2023 2 commits
- added train_mmcifs_cache.json · a1ef4c8f
  Geoffrey Yu authored Jul 21, 2023
  
  a1ef4c8f
- update test files · d7162be4
  Geoffrey Yu authored Jul 21, 2023
  
  d7162be4
16 Jul, 2023 1 commit
- added test alignment files for dataloader unittest · dbc0b085
  Dingquan Yu authored Jul 16, 2023
  
  dbc0b085