Commits · 30764cf9e0506ada52c125df387f676cbc9785f0 · OpenDAS / OpenFold

03 Aug, 2023 4 commits
- Minor fixes/reformatting for recent multimer training PR · 30764cf9
  Christina Floristean authored Aug 03, 2023
  
  30764cf9
- update train_mmcifs_cache so that now only use one structure for testing · e963726b
  Geoffrey Yu authored Aug 03, 2023
  
  e963726b
- removed old data and script for permutation unittest. now working on the new permutation unittest · 139ea9a6
  Geoffrey Yu authored Aug 03, 2023
  
  139ea9a6
- removed unused alignment files · e2193f77
  Geoffrey Yu authored Aug 03, 2023
  
  e2193f77
02 Aug, 2023 1 commit
- Bug fixes for multimer inference and monomer training · fdcb72e8
  Christina Floristean authored Aug 02, 2023
  
  fdcb72e8
21 Jul, 2023 2 commits
- added train_mmcifs_cache.json · a1ef4c8f
  Geoffrey Yu authored Jul 21, 2023
  
  a1ef4c8f
- update test files · d7162be4
  Geoffrey Yu authored Jul 21, 2023
  
  d7162be4
16 Jul, 2023 3 commits
- added test alignment files for dataloader unittest · dbc0b085
  Dingquan Yu authored Jul 16, 2023
  
  dbc0b085
- remove unnecessary test files · 39d67ba5
  Dingquan Yu authored Jul 16, 2023
  
  39d67ba5
- update test script · 173f055e
  Dingquan Yu authored Jul 16, 2023
  
  173f055e
14 Jul, 2023 1 commit
- update test · caac73c0
  Geoffrey Yu authored Jul 14, 2023
  
  caac73c0
11 Jul, 2023 1 commit
- update test script · ca340ce8
  Geoffrey Yu authored Jul 11, 2023
  
  ca340ce8
10 Jul, 2023 1 commit
- update test script · 42a89403
  Geoffrey Yu authored Jul 10, 2023
  
  42a89403
09 Jul, 2023 1 commit
- update test scripts · 71fdc063
  Geoffrey Yu authored Jul 09, 2023
  
  71fdc063
07 Jul, 2023 1 commit
- correct the file name · 31c976b5
  Geoffrey Yu authored Jul 07, 2023
  
  31c976b5
06 Jul, 2023 3 commits
- added small test, train, and validation alignment files · a4000358
  Geoffrey Yu authored Jul 06, 2023
  
  a4000358
- add test script for multimer datamodule · 510b12f7
  Geoffrey Yu authored Jul 06, 2023
  
  510b12f7
- modify imports and header · 8f08fbb7
  Geoffrey Yu authored Jul 06, 2023
  
  8f08fbb7
30 Jun, 2023 3 commits
- change it back to unittest testunit · 7e969e48
  Geoffrey Yu authored Jun 30, 2023
  
  7e969e48
- update test codes so that it generates correct structure of input data · 1e268fd5
  Geoffrey Yu authored Jun 30, 2023
  
  1e268fd5
- fixed the input data generation so that true_msa and bert_mask shapes are... · 1b4fc115
  Geoffrey Yu authored Jun 30, 2023
```
fixed the input data generation so that true_msa and bert_mask shapes are correct otherwise crashes in loss calculations
```
  1b4fc115
29 Jun, 2023 2 commits
- updated the loss config so that the masked msa dim is 22 instead of 23 · 9ebb1e1a
  Geoffrey Yu authored Jun 29, 2023
  
  9ebb1e1a
- update test code · c8a3f35e
  Geoffrey Yu authored Jun 29, 2023
  
  c8a3f35e
28 Jun, 2023 1 commit
- added batch_size dimension · c69053e5
  Geoffrey Yu authored Jun 28, 2023
  
  c69053e5
26 Jun, 2023 1 commit
- update the test input to be A2B3 · 5621ac05
  Geoffrey Yu authored Jun 26, 2023
  
  5621ac05
24 Jun, 2023 3 commits
- added example label files · a741b42a
  Geoffrey Yu authored Jun 24, 2023
  
  a741b42a
- remove unnecessary extra file · 50abc1a7
  Geoffrey Yu authored Jun 24, 2023
  
  50abc1a7
- revert data_utils and remove all the changes in this file · 85cd91f6
  Geoffrey Yu authored Jun 24, 2023
  
  85cd91f6
22 Jun, 2023 6 commits
- update test codes · ab659c39
  Geoffrey Yu authored Jun 22, 2023
  
  ab659c39
- fixed downstream greedy align · 4a66504c
  Geoffrey Yu authored Jun 22, 2023
  
  4a66504c
- now used the new way of selecting anchors · a0f8a057
  Geoffrey Yu authored Jun 22, 2023
  
  a0f8a057
- finished codes for num_sym 1 · 54755901
  Geoffrey Yu authored Jun 22, 2023
  
  54755901
- fixed get_anchor_candidates error · f563944a
  Geoffrey Yu authored Jun 22, 2023
  
  f563944a
- remove recycling dimentions · c6ac105d
  Geoffrey Yu authored Jun 22, 2023
  
  c6ac105d
21 Jun, 2023 3 commits
- update codes · d3b2b265
  Geoffrey Yu authored Jun 21, 2023
  
  d3b2b265
- fixed the assertion errors in get_optimal_transform · d4b6163d
  Geoffrey Yu authored Jun 21, 2023
  
  d4b6163d
- finished working on selecting best anchors. now start working on get_optimal_transform · e3e8a681
  Geoffrey Yu authored Jun 21, 2023
  
  e3e8a681
20 Jun, 2023 1 commit
- start working on permutation · 1008f61d
  Geoffrey Yu authored Jun 20, 2023
  
  1008f61d
14 Jun, 2023 1 commit
- Added multimer changes for loss functions · 51556d52
  Christina Floristean authored Jun 14, 2023
  
  51556d52
17 Apr, 2023 1 commit
- Multimer v3 updates · 68828c49
  Christina Floristean authored Apr 17, 2023
  
  68828c49