Commits · 1a341511d3480882eab59260207859ec9c85b8e0 · OpenDAS / OpenFold

07 Oct, 2021 1 commit
- Add DRMSD computation · 1a341511
  Gustaf Ahdritz authored Oct 07, 2021
  
  1a341511
06 Oct, 2021 1 commit
- Fix another FP16 overflow, finish tests, update util scripts · 9f6b67f3
  Gustaf Ahdritz authored Oct 06, 2021
  
  9f6b67f3
05 Oct, 2021 1 commit
- Get FP16 training working · 893fe372
  Gustaf Ahdritz authored Oct 05, 2021
  
  893fe372
04 Oct, 2021 1 commit
- Add barebones EMA · dd06b323
  Gustaf Ahdritz authored Oct 04, 2021
  
  dd06b323
02 Oct, 2021 3 commits
- Update type checks in tensor_tree_map · ff969b98
  Gustaf Ahdritz authored Oct 02, 2021
  
  ff969b98
- Sidestep AMP bug · f34bef8e
  Gustaf Ahdritz authored Oct 02, 2021
  
  f34bef8e
- Begin to spruce up unit tests, fix config · 304b5ff7
  Gustaf Ahdritz authored Oct 02, 2021
  
  304b5ff7
01 Oct, 2021 2 commits
- Work on import infrastructure · abd78418
  Gustaf Ahdritz authored Sep 30, 2021
  
  abd78418
- Correct commands in README · bb5b4b5c
  Gustaf Ahdritz authored Sep 30, 2021
  
  bb5b4b5c
30 Sep, 2021 3 commits
- Add pTM config options, spruce up pretrained script, add test script · 54317fe4
  Gustaf Ahdritz authored Sep 30, 2021
  
  54317fe4
- Add draft setup.py · 3fb44548
  Gustaf Ahdritz authored Sep 30, 2021
  
  3fb44548
- Finish purge of in-place ops, get grads working, add TM · eb49136d
  Gustaf Ahdritz authored Sep 30, 2021
  
  eb49136d
28 Sep, 2021 1 commit
- Finish accommodating FP16. FAPE does not decrease · 1d47c1e7
  Gustaf Ahdritz authored Sep 28, 2021
  
  1d47c1e7
27 Sep, 2021 8 commits
- Remove vestigial unit tests · 3d9d977a
  Gustaf Ahdritz authored Sep 27, 2021
  
  3d9d977a
- Fix tensor casting, improve TorchScript compatibility · de0fa7b1
  Gustaf Ahdritz authored Sep 27, 2021
  
  de0fa7b1
- Update pretrained runner · 7d53297c
  Gustaf Ahdritz authored Sep 27, 2021
  
  7d53297c
- Add missing license notice · 2065a6ca
  Gustaf Ahdritz authored Sep 27, 2021
  
  2065a6ca
- Add DeepSpeed config script · cc6ba534
  Gustaf Ahdritz authored Sep 27, 2021
  
  cc6ba534
- Fix IPA bug, add missing dtype specs · e98c202d
  Gustaf Ahdritz authored Sep 27, 2021
  
  e98c202d
- Fix OPM bug · ad2e5c97
  Gustaf Ahdritz authored Sep 27, 2021
  
  ad2e5c97
- Refactor certain modules for TorchScript, fix recycling bug · b2d102cb
  Gustaf Ahdritz authored Sep 27, 2021
  
  b2d102cb
26 Sep, 2021 3 commits
- Add first attempt at scripting attention · 4bd4ad93
  Gustaf Ahdritz authored Sep 26, 2021
  
  4bd4ad93
- Add missing config values · dd8e44b3
  Gustaf Ahdritz authored Sep 26, 2021
  
  dd8e44b3
- Continue debugging loss functions, remove in-place ops · ab0c6977
  Gustaf Ahdritz authored Sep 26, 2021
  
  ab0c6977
24 Sep, 2021 3 commits
- Disable activation checkpointing during inference · 85c0a9a9
  Gustaf Ahdritz authored Sep 24, 2021
  
  85c0a9a9
- Fix sidechain loss, touch up README · 0333b7a3
  Gustaf Ahdritz authored Sep 24, 2021
  
  0333b7a3
- Continue fixing loss bugs, clean up structure module docs · 68ba77e5
  Gustaf Ahdritz authored Sep 24, 2021
  
  68ba77e5
23 Sep, 2021 1 commit
- Fix loss bugs · 33941e46
  Gustaf Ahdritz authored Sep 23, 2021
  
  33941e46
22 Sep, 2021 4 commits
- Update documentation again · 1bc68426
  Gustaf Ahdritz authored Sep 22, 2021
  
  1bc68426
- Update documentation · 448303eb
  Gustaf Ahdritz authored Sep 22, 2021
  
  448303eb
- Improve memory efficiency, fix OpenMM CUDA + loss bugs · 9ce8713c
  Gustaf Ahdritz authored Sep 22, 2021
  
  9ce8713c
- Add conda env scripts · 754d2ba8
  Gustaf Ahdritz authored Sep 22, 2021
  
  754d2ba8
20 Sep, 2021 5 commits
- Rename main directory · 75c79b79
  Gustaf Ahdritz authored Sep 20, 2021
  
  75c79b79
- Add README draft · bf382368
  Gustaf Ahdritz authored Sep 20, 2021
  
  bf382368
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · a1b5f878
  Gustaf Ahdritz authored Sep 20, 2021
  
  a1b5f878
- First draft of loss class · df6b97f2
  Gustaf Ahdritz authored Sep 20, 2021
  
  df6b97f2
- Update README.md · c7a36572
  Mohammed AlQuraishi authored Sep 20, 2021
  
  c7a36572
17 Sep, 2021 2 commits
- Add requirements & minor edits · 15895ea9
  Gustaf Ahdritz authored Sep 17, 2021
  
  15895ea9
- Initial commit · 92f1932e
  Gustaf Ahdritz authored Sep 17, 2021
  
  92f1932e
14 Sep, 2021 1 commit
- Initial commit · 3d9c2de3
  Mohammed AlQuraishi authored Sep 14, 2021
  
  3d9c2de3