Commits · 16d75057f0221f74ac2b944314d70622e8932052 · OpenDAS / OpenFold

06 Feb, 2022 1 commit
- Update training script · fbec92cb
  Gustaf Ahdritz authored Feb 06, 2022
  
  fbec92cb
03 Feb, 2022 5 commits
- Remove alignment index · 3279b28d
  Gustaf Ahdritz authored Feb 03, 2022
  
  3279b28d
- Remove redundant checkpoint · 55bf27d4
  Gustaf Ahdritz authored Feb 03, 2022
  
  55bf27d4
- Make filtering more efficient · 676b6668
  Gustaf Ahdritz authored Feb 01, 2022
  
  676b6668
- Prep for training · f30d77b7
  Gustaf Ahdritz authored Jan 27, 2022
  
  f30d77b7
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
28 Jan, 2022 2 commits
- Remove tiny epsilon from default optimizer · 0067da9f
  Gustaf Ahdritz authored Jan 27, 2022
  
  0067da9f
- Fix type bug in training script · c392b21c
  Gustaf Ahdritz authored Jan 27, 2022
  
  c392b21c
26 Jan, 2022 1 commit
- Fix for reopening of #4 (not same issue as before). · afd2d839
  Sachin Kadyan authored Jan 25, 2022
```
Added obsolete_pdbs_file_path flag in the training script.
```
  afd2d839
13 Jan, 2022 1 commit
- val_loss fix and stop sampling recycling iterations in validation · e9d2d893
  Kolja Stahl authored Jan 13, 2022
  
  e9d2d893
31 Dec, 2021 2 commits
- Add missing cached_weights line · 30e051cf
  Gustaf Ahdritz authored Dec 31, 2021
  
  30e051cf
- Remove CUDA_VISIBLE_DEVICES setting · f9dc8b15
  Gustaf Ahdritz authored Dec 30, 2021
  
  f9dc8b15
29 Dec, 2021 1 commit
- Fix TorchScripting bug, add command-line parameter for scripting · b47138dc
  Gustaf Ahdritz authored Dec 29, 2021
  
  b47138dc
28 Dec, 2021 1 commit
- Reformat train_openfold.py · ca43b8dd
  Gustaf Ahdritz authored Dec 28, 2021
  
  ca43b8dd
26 Nov, 2021 1 commit
- Fix no-GPU behavior · f3f224a9
  Gustaf Ahdritz authored Nov 25, 2021
  
  f3f224a9
19 Nov, 2021 1 commit
- Make more components TorchScript-able, add tracing · 34e9363c
  Gustaf Ahdritz authored Nov 19, 2021
  
  34e9363c
15 Nov, 2021 1 commit
- Fix bug in training script · 41c68b1e
  Gustaf Ahdritz authored Nov 15, 2021
  
  41c68b1e
09 Nov, 2021 1 commit
- Add MMseqs2 MSA generation · 36f317be
  Gustaf authored Nov 09, 2021
  
  36f317be
04 Nov, 2021 1 commit
- specify cluster_environment for DeepSpeed if running with SLURM · cb4eecb0
  Marta authored Nov 04, 2021
  
  cb4eecb0
02 Nov, 2021 5 commits
- pass callbacks to trainer · 005e6125
  Marta authored Nov 02, 2021
  
  005e6125
- log_dir -> log_file for dllogger · f1a9d2b4
  Marta authored Nov 02, 2021
  
  f1a9d2b4
- fix bool args parsing bug · 3a65a7c9
  Marta authored Nov 02, 2021
  
  3a65a7c9
- dont try to use ddp for single-gpu single-node training · cd5a1e13
  Marta authored Nov 02, 2021
  
  cd5a1e13
- perf callback · 35449bf1
  Marta authored Oct 29, 2021
  
  35449bf1
29 Oct, 2021 2 commits
- Remove experimental features committed by mistake · 9df2af52
  Gustaf Ahdritz authored Oct 29, 2021
  
  9df2af52
- Fix horrible in-place operation bug · d5480cbe
  Gustaf Ahdritz authored Oct 29, 2021
  
  d5480cbe
26 Oct, 2021 2 commits
- Fix model checkpointing bug · a9a19b78
  Gustaf Ahdritz authored Oct 26, 2021
  
  a9a19b78
- Add ProteinNet support to parser · b5f885d0
  Gustaf Ahdritz authored Oct 26, 2021
  
  b5f885d0
23 Oct, 2021 2 commits
- Fix PDB parsing, add distillation MSA cropping · 6298a3e6
  Gustaf Ahdritz authored Oct 23, 2021
  
  6298a3e6
- Add training callbacks · 4c9d372d
  Gustaf Ahdritz authored Oct 23, 2021
  
  4c9d372d
22 Oct, 2021 2 commits
- Improve global seeding, clean up training script a little · 1715e3d5
  Gustaf Ahdritz authored Oct 22, 2021
  
  1715e3d5
- Add dummy dataloader, most recent version of training script · fcf9e2f8
  Gustaf Ahdritz authored Oct 22, 2021
  
  fcf9e2f8
18 Oct, 2021 2 commits
- Add mmCIF cache generation script, remove verbose warnings · 23886619
  Gustaf Ahdritz authored Oct 18, 2021
  
  23886619
- Make chunk size more flexible, reduce verbosity · b026de28
  Gustaf Ahdritz authored Oct 17, 2021
  
  b026de28
17 Oct, 2021 1 commit
- Refactor data pipeline; add distillation parsing · a59ae7c1
  Gustaf Ahdritz authored Oct 17, 2021
  
  a59ae7c1
15 Oct, 2021 1 commit
- Add training parsers · d48c052c
  Gustaf Ahdritz authored Oct 15, 2021
  
  d48c052c