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Commit fc7bb8a3 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Fix bug in flattening script

parent 8881b210
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Showing with 1 addition and 3 deletions
scripts/flatten_roda.sh
View file @ fc7bb8a3
...@@ -27,9 +27,7 @@ for chain_dir in $(ls "${RODA_DIR}"); do ...@@ -27,9 +27,7 @@ for chain_dir in $(ls "${RODA_DIR}"); do
CHAIN_DIR_PATH="${RODA_DIR}/${chain_dir}" CHAIN_DIR_PATH="${RODA_DIR}/${chain_dir}"
for subdir in $(ls "${CHAIN_DIR_PATH}"); do for subdir in $(ls "${CHAIN_DIR_PATH}"); do
if [[ $subdir = "pdb" ]] || [[ $subdir = "cif" ]]; then if [[ $subdir = "pdb" ]] || [[ $subdir = "cif" ]]; then
CHAIN_DATA_DIR="${DATA_DIR}/${chain_dir}" mv "${CHAIN_DIR_PATH}/${subdir}"/* "${DATA_DIR}"
mkdir -p "${CHAIN_DATA_DIR}"
mv "${CHAIN_DIR_PATH}/${subdir}"/* "${CHAIN_DATA_DIR}"
else else
CHAIN_ALIGNMENT_DIR="${ALIGNMENT_DIR}/${chain_dir}" CHAIN_ALIGNMENT_DIR="${ALIGNMENT_DIR}/${chain_dir}"
mkdir -p "${CHAIN_ALIGNMENT_DIR}" mkdir -p "${CHAIN_ALIGNMENT_DIR}"
......
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