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OpenDAS
OpenFold
Commits
f6cc4a16
Commit
f6cc4a16
authored
Sep 26, 2023
by
Geoffrey Yu
Browse files
added logging infor about filtering results;revert filtering criteria back to default
parent
51f3325f
Changes
1
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-3
openfold/data/data_modules.py
openfold/data/data_modules.py
+3
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openfold/data/data_modules.py
View file @
f6cc4a16
...
@@ -24,7 +24,7 @@ from openfold.utils.tensor_utils import (
...
@@ -24,7 +24,7 @@ from openfold.utils.tensor_utils import (
tensor_tree_map
,
tensor_tree_map
,
)
)
import
random
import
random
logging
.
basicConfig
(
level
=
logging
.
INFO
)
@
contextlib
.
contextmanager
@
contextlib
.
contextmanager
def
temp_fasta_file
(
sequence_str
):
def
temp_fasta_file
(
sequence_str
):
...
@@ -724,9 +724,9 @@ class OpenFoldMultimerDataset(torch.utils.data.Dataset):
...
@@ -724,9 +724,9 @@ class OpenFoldMultimerDataset(torch.utils.data.Dataset):
mmcif_id
=
dataset
.
idx_to_mmcif_id
(
i
)
mmcif_id
=
dataset
.
idx_to_mmcif_id
(
i
)
mmcif_data_cache_entry
=
mmcif_data_cache
[
mmcif_id
]
mmcif_data_cache_entry
=
mmcif_data_cache
[
mmcif_id
]
if
deterministic_multimer_train_filter
(
mmcif_data_cache_entry
,
if
deterministic_multimer_train_filter
(
mmcif_data_cache_entry
,
max_resolution
=
9
,
max_resolution
=
9
):
minimum_number_of_residues
=
5
):
selected_idx
.
append
(
i
)
selected_idx
.
append
(
i
)
logging
.
info
(
f
"Originally
{
len
(
mmcif_data_cache
)
}
mmcifs. After filtering:
{
len
(
selected_idx
)
}
"
)
else
:
else
:
selected_idx
=
list
(
range
(
len
(
dataset
.
_mmcif_id_to_idx_dict
)))
selected_idx
=
list
(
range
(
len
(
dataset
.
_mmcif_id_to_idx_dict
)))
return
selected_idx
return
selected_idx
...
...
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