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Commit f68a6c69 authored by jnwei's avatar jnwei
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Update readme, also reset flash attention version to 0.2.1 in environment.yml

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FROM nvidia/cuda:11.7.1-cudnn8-devel-ubuntu18.04 FROM nvidia/cuda:11.3.1-cudnn8-devel-ubuntu18.04
# metainformation # metainformation
LABEL org.opencontainers.image.version = "1.0.0" LABEL org.opencontainers.image.version = "1.0.0"
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README.md
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...@@ -53,8 +53,9 @@ This package is currently supported for CUDA 11 and Pytorch 1.12 ...@@ -53,8 +53,9 @@ This package is currently supported for CUDA 11 and Pytorch 1.12
To install: To install:
1. Clone the repository, e.g. `git clone https://github.com/aqlaboratory/openfold.git` 1. Clone the repository, e.g. `git clone https://github.com/aqlaboratory/openfold.git`
1. From the `openfold` repo: 1. From the `openfold` repo:
- Create an [Anaconda/Mamba](https://docs.anaconda.com/free/anaconda/install/index.html) environment, e.g. - Create a [Mamba]("https://github.com/conda-forge/miniforge/releases/latest/download/) environment, e.g.
`conda env create -n openfold_env -f environment.yml` `mamba env create -n openfold_env -f environment.yml`
Mamba is recommended as the dependencies required by OpenFold are quite large and mamba can speed up the process.
- Activate the environment, e.g `conda activate openfold_env` - Activate the environment, e.g `conda activate openfold_env`
1. Run `scripts/install_third_party_dependencies.sh` to configure kernels and folding resources. 1. Run `scripts/install_third_party_dependencies.sh` to configure kernels and folding resources.
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