For some systems, it may help to append the Conda environment library path to `$LD_LIBRARY_PATH`. The `install_third_party_dependencies.sh` script does this once, but you may need this for each bash instance.
For some systems, it may help to append the Conda environment library path to `$LD_LIBRARY_PATH`. The `install_third_party_dependencies.sh` script does this once, but you may need this for each bash instance.
## Alignment and model parameter download
## Alignment Database Download
If you intend to generate your own alignments, e.g. for inference, you have two
If you intend to generate your own alignments, e.g. for inference, you have two
choices for downloading protein databases, depending on whether you want to use
choices for downloading protein databases, depending on whether you want to use
