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OpenDAS
OpenFold
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de91f011
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Commit
de91f011
authored
Dec 10, 2021
by
Gustaf Ahdritz
Committed by
GitHub
Dec 10, 2021
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Add MMseqs2 clarification
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71fabe1e
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README.md
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de91f011
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@@ -27,7 +27,7 @@ Python dependencies available through `pip` are provided in `requirements.txt`.
OpenFold depends on
`openmm==7.5.1`
and
`pdbfixer`
, which are only available
via
`conda`
. For producing sequence alignments, you'll also need
`kalign`
, the
[
HH-suite
](
https://github.com/soedinglab/hh-suite
)
, and one of
{
`jackhmmer`
,
[
MMseqs2
](
https://github.com/soedinglab/mmseqs2
)
} installed on
{
`jackhmmer`
,
[
MMseqs2
](
https://github.com/soedinglab/mmseqs2
)
(
nightly
build)
} installed on
on your system. Finally, some download scripts require
`aria2c`
.
For convenience, we provide a script that installs Miniconda locally, creates a
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