Commit cde001fc authored by etowahadams's avatar etowahadams
Browse files

add environment variables

parent b79ca29c
...@@ -20,8 +20,10 @@ At this time, only Linux systems are supported. ...@@ -20,8 +20,10 @@ At this time, only Linux systems are supported.
- Activate the environment, e.g `conda activate openfold_env` - Activate the environment, e.g `conda activate openfold_env`
1. Run the setup script to configure kernels and folding resources. 1. Run the setup script to configure kernels and folding resources.
> scripts/install_third_party_dependencies.sh` > scripts/install_third_party_dependencies.sh`
1. Prepend the conda environment to the `$LD_LIBRARY_PATH`., e.g. 1. Prepend the conda environment to the `$LD_LIBRARY_PATH` and `$LIBRARY_PATH`.
`export $LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH`. You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used. > export LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH
> export LIBRARY_PATH=$CONDA_PREFIX/lib:$LIBRARY_PATH
- You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used.
1. Download parameters. We recommend using a destination as `openfold/resources` as our unittests will look for the weights there. 1. Download parameters. We recommend using a destination as `openfold/resources` as our unittests will look for the weights there.
- For AlphaFold2 weights, use - For AlphaFold2 weights, use
> ./scripts/download_alphafold_params.sh <dest> > ./scripts/download_alphafold_params.sh <dest>
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