Moved all execution wrappers into a separate package directory.

openfold/features/hhblits.py → openfold/features/tools/hhblits.py

@@ -8,7 +8,7 @@ from typing import Any, Mapping, Optional, Sequence
 from absl import logging
 
 # Internal import (7716).
-from features import utils
+from features.tools import utils
 
 _HHBLITS_DEFAULT_P = 20
 _HHBLITS_DEFAULT_Z = 500

openfold/features/hhsearch.py → openfold/features/tools/hhsearch.py

@@ -9,7 +9,7 @@ from absl import logging
 
 
 # Internal import (7716).
-from features import utils
+from features.tools import utils
 
 
 class HHSearch:

openfold/features/jackhmmer.py → openfold/features/tools/jackhmmer.py

@@ -12,7 +12,7 @@ from absl import logging
 
 
 # Internal import (7716).
-from features import utils
+from features.tools import utils
 
 
 class Jackhmmer:

openfold/features/kalign.py → openfold/features/tools/kalign.py

@@ -6,8 +6,7 @@ from typing import Sequence
 
 from absl import logging
 
-
-from features import utils
+from features.tools import utils
 
 
 def _to_a3m(sequences: Sequence[str]) -> str: