Commit 7f8d1246 authored by jnwei's avatar jnwei
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Shorten README.md main page.

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...@@ -6,6 +6,8 @@ In this guide, we will OpenFold and its dependencies. ...@@ -6,6 +6,8 @@ In this guide, we will OpenFold and its dependencies.
This package is currently supported for CUDA 11 and Pytorch 1.12. All dependencies are listed in the [`environment.yml`](https://github.com/aqlaboratory/openfold/blob/main/environment.yml) This package is currently supported for CUDA 11 and Pytorch 1.12. All dependencies are listed in the [`environment.yml`](https://github.com/aqlaboratory/openfold/blob/main/environment.yml)
At this time, only Linux systems are supported.
## Instructions ## Instructions
::: :::
...@@ -58,24 +60,3 @@ If you don't have access to `aws` on your system, you can use a different downlo ...@@ -58,24 +60,3 @@ If you don't have access to `aws` on your system, you can use a different downlo
### Docker setup ### Docker setup
A [`Dockerfile`] is provided to build an OpenFold Docker image. Additional notes for setting up a docker container for OpenFold and running inference can be found [here](original_readme.md#building-and-using-the-docker-container). A [`Dockerfile`] is provided to build an OpenFold Docker image. Additional notes for setting up a docker container for OpenFold and running inference can be found [here](original_readme.md#building-and-using-the-docker-container).
## Troubleshooting FAQ
- In the unit tests, I see an error such as
```
ImportError: version GLIBCXX_3.4.30 not found
```
> Solution: Make sure that the `$LD_LIBRARY_PATH` environment has been set to include the conda path, e.g. `export $LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH`
- I see a CUDA mismatch error, eg.
```
The detected CUDA version (11.8) mismatches the version that was used to compile
PyTorch (12.1). Please make sure to use the same CUDA versions.
```
> Solution: Ensure that your system's CUDA driver and toolkit are is 12.x. You can check the CUDA driver version with a command such as `nvidia-smi`
- I get some error involving `fatal error: cuda_runtime.h: No such file or directory` and or `ninja: build stopped: subcommand failed.`.
> Solution: Something went wrong with setting up some of the custom kernels. Try running `install_third_party_dependencies.sh` again or try `python3 setup.py install` from inside the OpenFold folder. Make sure to prepend the conda environment as described above before running this.
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