Skip to content

GitLab

Commit 6e5c619c authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
Browse files

Fix bug in alignment precomputation script

parent dde7e6c4
Hide whitespace changes
Inline Side-by-side
Showing with 2 additions and 1 deletion
scripts/precompute_alignments.py
View file @ 6e5c619c
...@@ -5,6 +5,7 @@ import tempfile ...@@ -5,6 +5,7 @@ import tempfile
import openfold.data.mmcif_parsing as mmcif_parsing import openfold.data.mmcif_parsing as mmcif_parsing
from openfold.data.data_pipeline import AlignmentRunner from openfold.data.data_pipeline import AlignmentRunner
from openfold.data.parsers import parse_fasta
from openfold.np import protein, residue_constants from openfold.np import protein, residue_constants
from utils import add_data_args from utils import add_data_args
...@@ -53,7 +54,7 @@ def main(args): ...@@ -53,7 +54,7 @@ def main(args):
elif(f.endswith('.fasta')): elif(f.endswith('.fasta')):
with open(path, 'r') as fp: with open(path, 'r') as fp:
fasta_str = fp.read() fasta_str = fp.read()
input_seqs, _ = parsers.parse_fasta(fasta_str) input_seqs, _ = parse_fasta(fasta_str)
if len(input_seqs) != 1: if len(input_seqs) != 1:
msg = f'More than one input_sequence found in {f}' msg = f'More than one input_sequence found in {f}'
if(args.raise_errors): if(args.raise_errors):
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment