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Commit 61480c36 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Merge branch 'main' of github.com:aqlaboratory/openfold into main

parents d537f433 bfa6c7d0
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README.md
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...@@ -177,9 +177,8 @@ For large-scale batch inference, we offer an optional tracing mode, which ...@@ -177,9 +177,8 @@ For large-scale batch inference, we offer an optional tracing mode, which
massively improves runtimes at the cost of a lengthy model compilation process. massively improves runtimes at the cost of a lengthy model compilation process.
To enable it, add `--trace_model` to the inference command. To enable it, add `--trace_model` to the inference command.
By default, [FlashAttention](https://github.com/HazyResearch/flash-attention) To get a speedup during inference, [FlashAttention](https://github.com/HazyResearch/flash-attention)
is enabled in the config. This speeds up computation of the evoformer's MSA enable FlashAttention in the config.
column attention module.
Input FASTA files containing multiple sequences are treated as complexes. In Input FASTA files containing multiple sequences are treated as complexes. In
this case, the inference script runs AlphaFold-Gap, a hack proposed this case, the inference script runs AlphaFold-Gap, a hack proposed
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