Exclude uniprot hits from regular msa feature processing

openfold/data/data_pipeline.py

@@ -725,7 +725,8 @@ class DataPipeline:
                     )
                 # The "hmm_output" exception is a crude way to exclude
                 # multimer template hits.
-                elif(ext == ".sto" and not "hmm_output" == filename):
+                # Multimer "uniprot_hits" processed separately.
+                elif(ext == ".sto" and filename not in ["uniprot_hits", "hmm_output"]):
                     msa = parsers.parse_stockholm(read_msa(start, size))
                 else:
                     continue
@@ -741,7 +742,7 @@ class DataPipeline:
                 if(ext == ".a3m"):
                     with open(path, "r") as fp:
                         msa = parsers.parse_a3m(fp.read())
-                elif(ext == ".sto" and not "hmm_output" == filename):
+                elif(ext == ".sto" and filename not in ["uniprot_hits", "hmm_output"]):
                     with open(path, "r") as fp:
                         msa = parsers.parse_stockholm(
                             fp.read()