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Commit 4c37c386 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Add conditions to model constructor

parent 6b547775
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Showing with 23 additions and 18 deletions
openfold/model/model.py
View file @ 4c37c386
......@@ -79,24 +79,29 @@ class AlphaFold(nn.Module):
self.recycling_embedder = RecyclingEmbedder(
**self.config["recycling_embedder"],
)
self.template_angle_embedder = TemplateAngleEmbedder(
**self.template_config["template_angle_embedder"],
)
self.template_pair_embedder = TemplatePairEmbedder(
**self.template_config["template_pair_embedder"],
)
self.template_pair_stack = TemplatePairStack(
**self.template_config["template_pair_stack"],
)
self.template_pointwise_att = TemplatePointwiseAttention(
**self.template_config["template_pointwise_attention"],
)
self.extra_msa_embedder = ExtraMSAEmbedder(
**self.extra_msa_config["extra_msa_embedder"],
)
self.extra_msa_stack = ExtraMSAStack(
**self.extra_msa_config["extra_msa_stack"],
)
if(self.template_config.enabled):
self.template_angle_embedder = TemplateAngleEmbedder(
**self.template_config["template_angle_embedder"],
)
self.template_pair_embedder = TemplatePairEmbedder(
**self.template_config["template_pair_embedder"],
)
self.template_pair_stack = TemplatePairStack(
**self.template_config["template_pair_stack"],
)
self.template_pointwise_att = TemplatePointwiseAttention(
**self.template_config["template_pointwise_attention"],
)
if(self.extra_msa_config.enabled):
self.extra_msa_embedder = ExtraMSAEmbedder(
**self.extra_msa_config["extra_msa_embedder"],
)
self.extra_msa_stack = ExtraMSAStack(
**self.extra_msa_config["extra_msa_stack"],
)
self.evoformer = EvoformerStack(
**self.config["evoformer_stack"],
)
......
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