Work on multimer continues

4bd1b4d5 · Gustaf Ahdritz · 54164fe8 · 4bd1b4d5 · 4bd1b4d5
Commit 4bd1b4d5 authored Apr 28, 2022 by Gustaf Ahdritz
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scripts/download_uniref90.sh scripts/download_uniref90.sh +0 -0

scripts/utils.py scripts/utils.py +12 -0

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--- a/scripts/download_uniref90.sh
+++ b/scripts/download_uniref90.sh
--- a/scripts/utils.py
+++ b/scripts/utils.py
@@ -12,9 +12,15 @@ def add_data_args(parser: argparse.ArgumentParser):
    parser.add_argument(
        '--pdb70_database_path', type=str, default=None,
    )
+    parser.add_argument(
+        '--pdb_seqres_database_path', type=str, default=None,
+    )
    parser.add_argument(
        '--uniclust30_database_path', type=str, default=None,
    )
+    parser.add_argument(
+        '--uniprot_database_path', type=str, default=None,
+    )
    parser.add_argument(
        '--bfd_database_path', type=str, default=None,
    )
@@ -27,6 +33,12 @@ def add_data_args(parser: argparse.ArgumentParser):
    parser.add_argument(
        '--hhsearch_binary_path', type=str, default='/usr/bin/hhsearch'
    )
+    parser.add_argument(
+        '--hmmsearch_binary_path', type=str, default='/usr/bin/hmmsearch'
+    )
+    parser.add_argument(
+        '--hmmbuild_binary_path', type=str, default='/usr/bin/hmmbuild'
+    )
    parser.add_argument(
        '--kalign_binary_path', type=str, default='/usr/bin/kalign'
    )