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2864b7ca
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2864b7ca
authored
Feb 09, 2022
by
Gustaf Ahdritz
Committed by
GitHub
Feb 09, 2022
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Correct description of mmCIF cache
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30f92c45
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README.md
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2864b7ca
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@@ -178,7 +178,7 @@ where `input.fasta` is a FASTA file containing one or more query sequences. To
generate an input FASTA from a directory of mmCIF and/or ProteinNet .core
files, we provide
`scripts/data_dir_to_fasta.py`
.
Next, generate a cache of certain datapoints in the mmCIF files:
Next, generate a cache of certain datapoints in the
template
mmCIF files:
```
bash
python3 scripts/generate_mmcif_cache.py
\
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@@ -187,9 +187,10 @@ python3 scripts/generate_mmcif_cache.py \
--no_workers
16
```
This cache is used to minimize the number of mmCIF parses performed during
training-time data preprocessing. Next, generate a separate chain-level cache
with data used for training-time data filtering:
This cache is used to pre-filter templates.
Next, generate a separate chain-level cache with data used for training-time
data filtering:
```
bash
python3 scripts/generate_chain_data_cache.py
\
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